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Complete nucleotide sequence of clover yellow mosaic virus RNA

¹ Department of Botany, University of Toronto, Toronto, Ontario M5S 3B2
and² Department of Biochemistry, University of Western Ontario, London, Ontario, Canada N6A 5C1

The entire genomic RNA of clover yellow mosaic virus was sequenced from cDNA clones and run-off cDNA transcripts. The genomic RNA is 7015 nucleotides in length [excluding a 3' poly(A) tail], with six open reading frames (ORFs) greater than 150 nucleotides in length. The first five ORFs encode proteins of M_r 191K, 26K, 12K, 6.5K and 28K, respectively. The sixth ORF lies completely within ORF1 and codes for a protein of M_r 14K. The capsid protein coding region (M_r 23K) is found within ORF5 which encodes the M_r 28K protein. Proteins encoded by ORFs 1 to 3 and ORF5 show strong homology with proteins of other potexviruses, especially papaya mosaic virus.

Received 16 January 1990; accepted 24 May 1990.

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