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J Gen Virol 77 (1996), 687-694; DOI 10.1099/0022-1317-77-4-687
© 1996 Society for General Microbiology

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Khabarovsk virus: a phylogenetically and serologically distinct Hantavirus isolated from Microtus fortis trapped in far-east Russia

Jan Hörling1,2,*, Vladimir Chizhikov3, Åke Lundkvist1,2,, Mari Jonsson1, Leonid Ivanov4, Alexander Dekonenko5, Bo Niklasson1,6,, Tamara Dzagurova5, Clarence J. Peters3, Evgeni Tkachenko5 and Stuart Nichol3

1 Swedish Institute for Infectious Disease Control, S-105 21 Stockholm, Sweden
2 Department of Virology, Karolinska Institute, S-171 77 Stockholm, Sweden
3 Special Pathogens Branch, Division of Viral and Rickettsial Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA
4 Anti-plague Station, Khabarovsk, Russia
5 Chumakov Institute of Poliomyelitis and Viral Encephalitides, Ac. Med. Sci., Moscow, Russia
and6 National Defence Research Establishment, FOA-4, S-901 82 Umeå, Sweden

Two hantavirus strains, MF43 and MF113, isolated from Microtus fortis trapped in the Khabarovsk region of far-eastern Russia, were analysed by direct nucleotide sequencing of PCR generated fragments of the M and S segments, by immunofluorescence and by focus reduction neturalization tests (FRNT). The nucleotide sequences revealed that the two isolates were closely related to each other but distinct from all other hantaviruses. Phylogenetic analysis of the M and S segments showed that the MF strains form a separate branch in the Hantavirus tree, positioned between the branches of Prospect Hill and Puumala viruses. The strains were shown to be serologically distinct from the other hantavirus serotypes by FRNT using immune rabbit sera. Puumala virus was the closest relative, both genetically and serologically. We propose that this new hantavirus serotype should be named Khabarovsk (KBR).

* Author for correspondence. Fax +46 8 7303248. e-mail Jan.Horling@smi.ki.se

Received 4 October 1995; accepted 18 December 1995.


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