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J Gen Virol 84 (2003), 2579-2583; DOI 10.1099/vir.0.19179-0

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© 2003 Society for General Microbiology

Short Communication

A single silent substitution in the genome of Apple stem grooving virus causes symptom attenuation

Hisae Hirata, Xiaoyun Lu, Yasuyuki Yamaji, Satoshi Kagiwada, Masashi Ugaki and Shigetou Namba

Laboratory of Bioresource Technology, Graduate School of Frontier Sciences, The University of Tokyo, 202 Bioscience Bldg, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8562, Japan

Correspondence
Shigetou Namba
snamba{at}ims.u-tokyo.ac.jp

Among randomly mutagenized clones derived from an infectious cDNA copy of genomic RNA of Apple stem grooving virus (ASGV), we previously identified a clone, pRM21, whose in vitro transcript (ASGV-RM21) does not induce any symptoms characteristic of the original (wild-type) cDNA clone (ASGV-wt) in several host plants. Interestingly, ASGV-RM21 has only a single, translationally silent nucleotide substitution, U to C, at nucleotide 4646 of the viral genome within open reading frame (ORF) 1. Here, we characterize and verify this unprecedented silent-mutation-induced attenuation of symptoms in infected plants. Northern and Western blot analyses showed that less ASGV-RM21 accumulates in host plants than ASGV-wt. In addition, two more silent substitutions, U to A and U to G, constructed by site-directed mutagenesis at the same nucleotide (4646), also induced attenuated symptoms. This is the first report that a single silent substitution attenuates virus-infection symptoms and implicates a novel determinant of disease symptom severity.




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