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J Gen Virol 88 (2007), 2762-2768; DOI 10.1099/vir.0.82941-0

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Short Communication

Molecular epidemiological analyses of Japanese encephalitis virus isolates from swine in Japan from 2002 to 2004

Reiko Nerome1, Shigeru Tajima1, Tomohiko Takasaki1, Takashi Yoshida1,2, Akira Kotaki1, Chang-Kweng Lim1, Mikako Ito1, Akira Sugiyama3, Akinori Yamauchi3, Takuya Yano3, Taeko Kameyama4, Ichiko Morishita4, Masaru Kuwayama5, Tomoko Ogawa6, Keiji Sahara7, Asaka Ikegaya8, Masahiro Kanda8, Yoshiyuki Hosoya8, Kiyomasa Itokazu9, Hajime Onishi10, Seizou Chiya11, Yasuko Yoshida12, Yukiko Tabei12, Kazuko Katsuki13, Koji Tabata13, Seiya Harada13 and Ichiro Kurane1

1 Department of Virology 1, National Institute of Infectious Diseases (NIID), Toyama, Shinjuku, Tokyo 162-8640, Japan
2 Mitsubishi Kagaku Bio-Clinical Laboratories Inc., Tokyo, Japan
3 Mie Prefectural Institute of Public Health and Environmental Sciences, Mie, Japan
4 Kagawa Prefectural Institute of Environment and Health, Kagawa, Japan
5 Hiroshima Prefectural Institute of Health and Environment, Hiroshima, Japan
6 Chiba Prefectural Institute of Public Health, Chiba, Japan
7 Shizuoka Prefectural Institute of Environment and Hygiene, Shizuoka, Japan
8 Shizuoka Prefectural Seibu Meat Inspection Center, Shizuoka, Japan
9 Okinawa Prefectural Institute of Health and Environment, Okinawa, Japan
10 Ishikawa Prefectural Institute of Public Health and Environmental Science, Ishikawa, Japan
11 The Public Health Institute of Kochi Prefecture, Kochi, Japan
12 Tokyo Metropolitan Institute of Public Health, Tokyo, Japan
13 Kumamoto Prefectural Institute of Public Health and Environmental Science, Kumamoto, Japan

Correspondence
Ichiro Kurane
kurane{at}nih.go.jp

To characterize Japanese encephalitis virus (JEV) strains recently prevalent in Japan, JEV surveillance was performed in pigs from 2002 to 2004. Eleven new JEV isolates were obtained and compared with previous isolates from Japan and other Asian countries. All of the isolates were classified into genotype 1 by nucleotide sequence analysis of the E gene. Two new isolates with different levels of neurovirulence and neuroinvasiveness, but with only one nucleotide difference in the E gene, Sw/Mie/34/2004 and Sw/Mie/40/2004, were isolated at the same farm on the same day. Sw/Mie/40/2004 displayed higher neurovirulence and neuroinvasiveness in mice than the other four new isolates. Another new isolate, Sw/Hiroshima/25/2002, was neutralized by antiserum to Beijing-1 at a level similar to the homologous Beijing-1 strain, whilst seven other new isolates were neutralized at 10-fold-lower titres. However, there were no amino acid differences in the E protein among these eight isolates. The present study indicated that the 11 new JEV isolates were genetically similar, but biologically and serologically heterogeneous.

The GenBank/EMBL/DDBJ accession numbers for the E gene and 3' NTR sequences of the 14 JEV isolates determined in this study (– indicates ‘data not available’) are: Sw/Hiroshima/46/1998 (AB174837, –), Sw/Hiroshima/38/2000 (AB174838, –), Sw/Kagawa/24/2002 (AB112706, –), Sw/Kagawa/27/2002 (AB112707, AB231626 ), Sw/Hiroshima/25/2004 (AB231465, AB231621), Sw/Shizuoka/33/2002 (AB112703, AB231620), Sw/Shizuoka/39/2002 (AB112704, –), Sw/Chiba/88/2002 (AB112705, AB231622), Sw/Mie/41/2002 (AB112709, AB231623), Sw/Okinawa/285/2003 (AB238693, AB238694) Sw/Kagawa/35/2004 (AB231464, AB231627), Sw/Mie/34/2004 (AB231462, AB231624), Sw/Mie/40/2004 (AB231463, AB231625), JaTAn 1/94 (AB237171, AB237172).







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