Data Collection for:

Magiorkinis et al. (2003). Journal of General Virology, 84, part 10, pp. 2715–2722.

Supplementary Data

Fig. 1. Representative analysis of a CRF02 strain of HIV-1 (HDJ264). To investigate the recombination pattern of each sequence, bootscanning plot analysis was performed; all nine pure HIV-1 subtypes (A–D, F–H, J and K) were included. Subtype classification of each region was confirmed by subsequent phylogenetic analysis. To search for any similarity of the unclassified regions with any HIV-1 sequences characterized previously, BLAST searchs were performed using the default settings (http://www.ncbi.nlm.nih.gov/BLAST/).

Fig. 2. Graphic representation of the frequency of recombination breakpoints (black) and the extent of sequence similarity (grey) across the HIV-1 genome for a sliding window of 1000 bp if recombination frequency was strongly ruled by evolutionary selection (negative correlation with similarity). A small phase difference might also be observed.

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