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Department of Molecular Microbiology and Immunology, St Louis University School of Medicine, 1402 South Grand Avenue, St Louis, MO 63104, USA
Correspondence
Thomas J. Chambers
thomas_chambers2{at}merck.com
| ABSTRACT |
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Published online ahead of print on 27 July 2006 as DOI 10.1099/vir.0.81909-0.
Present address: Merck and Co., Inc, PO Box 4, U2D-68, West Point, PA 19486, USA. ![]()
| INTRODUCTION |
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There is an increasing worldwide burden of human disease due to dengue viruses (Gubler, 1997
; Monath, 1994
). Serotype-specific immunity does not confer cross-protection against secondary infections with heterologous serotypes (Halstead, 2003
), which may contribute to the pathogenesis of dengue haemorrhagic fever and dengue shock syndrome as a result of antibody-dependent enhancement of infection mediated by cross-reactive, non-neutralizing antibodies. There is currently no licensed vaccine for dengue, despite intense efforts with a range of different approaches (Edelman, 2005
; Hombach et al., 2005
).
Molecular clone technology has been used to engineer chimeric flaviviruses as live-attenuated viral vaccines (Caufour et al., 2001
; Huang et al., 2000
; Mathenge et al., 2004
; Pletnev & Men, 1998
; Pletnev et al., 1992
, 2001
, 2002
). We have used this approach to produce chimeric viruses composed of dengue or JE virus structural antigens within the backbone of the yellow fever virus 17D strain for the development of novel flavivirus vaccines (Chambers et al., 1999
, 2003
; Guirakhoo et al., 1999
, 2000
, 2004
; Monath et al., 1999
, 2003
). Such viruses exhibit high immunogenicity and durable immunity. Because the properties of engineered chimeric flaviviruses cannot always be predicted, such viruses require careful characterization of their biological phenotypes in cell culture and experimental animal models. In the present study, we characterized a chimeric JE/dengue virus, which contained the prME region of an attenuated dengue 2 virus in the backbone of JE Nakayama virus.
| METHODS |
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Molecular cloning procedures.
Total cellular RNA was extracted from JE Nakayama virus-infected Vero cells by using TRIzol LE reagent (Gibco-BRL). The final RNA pellet was dissolved in RNase-free water. The primers for the reverse transcription and long PCR amplification were as follows (5'3'). These primers were based on the partial JE Nakayama sequence (McAda et al., 1987
) and the JaOArS982 sequence (GenBank accession no. M18370
[GenBank]
; Sumiyoshi et al., 1987
). Sense primers are indicated by (+) and antisense by (): JE5'(+), GAGAAGTTTATCTGTGT; JE5'NotI-SP6(+), GCGGCCGCATTTAGGTGACACTATAGAGAAGTTTATCTGTGTGAAC; JE3443BspEI(+), GATCCGGACAGAAAATGGCTGCT; JE3463BspEI(), GCAGCCATTTTCTGTCCGGAATCG; JE3'(), AGATCCTGTGTTCTTCCTCACC; JE3'KpnIM(), AGGTACCAGATCCTGTGTTCTTCCTCACCACC.
cDNA synthesis was done by using Superscript II RNaseH() reverse transcriptase (Gibco-BRL) according to the manufacturer's guidelines with slight modifications. In brief, 12 µg JE virus RNA was mixed with 10 pmol 3'-terminal primer [JE3'() or JE3463BspEI()], heated for 10 min at 70 °C, cooled on ice and then incubated with Superscript II in the recommended buffer for 24 h at 42 °C. Reactions were then treated with DNase-free ribonuclease H at 37 °C for 20 min, followed by heating to 70 °C for 10 min and then extraction with phenol/chloroform and ethanol precipitation of the cDNA reaction products. The final pellet was dissolved in water for PCR amplification.
PCR amplifications were done from cDNA by using the Expand High Fidelity PCR system (Roche). Reactions contained 10 pmol each of sense and antisense primers and were run for 30 cycles with the following program: 95 °C for 30 s; 95 °C for 1 min at 62 °C and 5 min or 8 min at 72 °C for the 5' [JE5'(+) plus JEBspEI3463()] and 3' [JE3'() and JEBspEI3443(+)] primer combinations, respectively. The final elongation step was 15 min at 72 °C. PCR products were isolated on agarose gels, visualized by crystal violet staining, excised and recovered by using extraction with 6 M sodium iodide at 70 °C. They were purified with the Wizard PCR Preps DNA purification system (Promega) and cloned into pCR-TOPO (Invitrogen). Clones were characterized by nucleotide sequencing.
To subclone the JE Nakayama virus genome from pCR-TOPO plasmids into plasmids suitable for generation of in vitro-ligation templates, the 5'-end PCR primer was modified to include a NotI restriction site followed by the Sp6 promoter sequence for cloning into a derivative of pYF5'3'IV (Rice et al., 1989
) (see below). The 3' PCR primer was modified to include a KpnI restriction site adjacent to the JE virus 3' terminus to enable linearization of the transcription templates with KpnI. The JE genome was then constructed in two separate plasmids, similar to the construction of the YF5.2iv and other molecular clones (Chambers et al., 1999
, 2003
; Rice et al., 1989
). Unique enzyme sites in the JE genome were predicted from the JaOArS982 sequence (Sumiyoshi et al., 1987
). Two PCR fragments (a 5' fragment of approximately 3.4 kb and 3' fragment of approximately 7.6 kb), overlapping an authentic unique BspEI restriction site at nt 3445, formed the basis of the two-plasmid system.
The 5' 3.4 kb PCR fragment from the 5' terminus to the BspEI site of JE virus (nt 3445) was cloned into pYF5'3'IV/JE-S (a derivative of YF5'3'IV containing an engineered BspEI site; Chambers et al., 1999
) by using the NotI (nt 6657) and BspEI [nt 8579, yellow fever virus genome (YF) numbering] restriction sites. Several pJE5'3'BX clones containing the 3.4 kb 5'-terminal PCR product were screened for infectivity together with clones of pCR-XL3'BK2 (see below), and one resulting clone, designated pJE5'NK25, was used to generate infectious JE virus.
The 7.6 kb 3' segment of the JE virus genome was engineered by PCR to contain the KpnI site at the 3' terminus of the JE virus genome and cloned again into pCR-XL-TOPO (Invitrogen). Resulting plasmid clones were screened by partial nucleotide sequence analysis and restriction-enzyme profiles. Several clones were used for further construction of full-length cDNA templates. A working clone, designated pCR JE3'NK, was used for virus production.
The final plasmids pJE5'NB25 and pCR-XL3'BK2, which yielded the two-plasmid system for regenerating JE virus, were used to determine the nucleotide sequence of the entire JE virus XJN infectious clone.
Construction of JE/dengue 2 virus.
To introduce the prME region of dengue 2 virus into the JE XJN clone, this region was engineered into pJE5'NB25 (described above) to replace the JE prME region. The plasmid pDVWS307 (Gualano et al., 1998
), containing the dengue 2 prME region of the PUO-218 strain, was used as the starting material. A fragment spanning the dengue 2 C/prM and E/NS1 junctions was amplified by PCR and cloned into pCR-TOPO to create pDen-2(prME)-TOPO. KasI sites were introduced immediately prior to the C/prM cleavage site in this plasmid, as well as pJE5'NB25, by silent mutagenesis. The C-terminal regions of the JE and dengue 2 E proteins were modified by introduction of an SphI site at the E/NS1 junction by site-directed mutagenesis, involving a single amino acid replacement (VQA instead of VHA) at the signalase site. A redundant SphI site upstream in the dengue 2 E region was also eliminated by silent mutagenesis. The dengue 2 prME region was exchanged into pJENB25 by using the KasI and SphI restriction sites to yield pJE5'NK/DEN2. This plasmid was sequenced through the engineered structural region to ensure the integrity of the clone.
RNA transcription and transfection.
Full-length cDNA templates for infectious JE virus were assembled by using DNA fragments from pJE5'NB25 (after digestion with NotI and BspEI) and pCRXL3'BK2 (after digestion with BspEI and KpnI). Fragments were isolated on low-melting-temperature agarose gels. Approximately 3.0 µg of the 3.4 kb NotIBspEI fragment and 12.0 µg of the 7.6 kb BspEIKpnI fragment were ligated in reactions containing 400 units T4 DNA ligase (New England Biolabs) for 12 h at 16 °C. Reactions were then heat-inactivated, digested with KpnI, extracted with phenol/chloroform and precipitated with ethanol. The final pellet was dissolved in TE [10 mM Tris/HCl (pH 7.5), 1 mm EDTA] and the full-length ligation product was visualized by agarose-gel electrophoresis. Templates were transcribed by using Sp6 RNA polymerase (New England Biolabs), essentially as described previously (Rice et al., 1989
). Transfection of confluent BHK cells was done by using Lipofectin (Gibco-BRL) and cells were incubated at 37 °C in MEM plus 5 % FBS. Medium was harvested at onset of cytopathic effects, approximately 4 days post-transfection. Infectious virus was titrated by plaque assay on Vero cells.
A similar protocol was used for recovery of transcription templates for JE/dengue 2 virus, except that pJE-5'NK/DEN2 was used to generate the 5' ligation fragment instead of pJE-5'NB25. Transcription and transfection were done as described above.
Virus growth curves.
Virus production in cell culture was analysed by using confluent monolayers of C6/36, LLC-MK2 or BHK-21 cells at an m.o.i. of 0.01 p.f.u. per cell. Triplicate samples were run for each virus in each cell line. After infection for 1 h at 37 °C (BHK and LLC-MK2) or 28 °C (C6/36 cells), media were replaced and cells were incubated at 37 °C (BHK and LLC-MK2 cells) or 28 °C (C6/36 cells). Media were harvested at 12 h (BHK and LLC-MK2 cells) or 24 h (C6/36 cells) intervals, followed by replacement with fresh medium (alpha MEM plus 5 % FBS). Virus yields were quantified by plaque titration on Vero cells (JE Nakayama, JE-XJN and dengue 2 viruses) or SW-13 cells (JE/dengue 2 viruses), as described above.
Nucleotide sequence analyses.
Plasmids encoding the JE Nakayama virus or JE/dengue 2 virus were sequenced by using Applied Biosystems BigDye sequence reactions and analysed on an ABI DNA sequencer.
Plaque-reduction neutralization testing.
The plaque-reduction neutralization assay was done as described previously (Chambers et al., 1999
, 2003
). JE hyperimmune ascitic fluid and control non-immune ascitic fluids were obtained from the ATCC. Monoclonal antibody (mAb) to the dengue 2 envelope protein (cat. no. AS-22-99; clone 3H5) was obtained from Microbix Systems. Approximately 100 p.f.u. input virus was mixed with serial twofold dilutions of immune ascitic fluid, mAb or non-immune control ascitic fluid in various experiments. The reaction mixture was kept at 4 °C for 6 h, followed by plaque assay on SW-13 cells (for JE/dengue 2 virus) or Vero cells (for JE and dengue 2 viruses) using conditions described earlier. Plaques were visualized as described earlier. Fifty and ninety per cent plaque-reduction end points were used for evaluation of neutralization titres.
Radiolabelling of infected cells.
Cells were infected at an m.o.i. of 5 p.f.u. per cell and labelled in medium containing 20 µCi (740 kBq) [35S]methionine ml1 (ICN) at approximately 20 h post-infection for 46 h. Cells were lysed in Triton lysis solution [50 mM Tris/HCl (pH 7.5), 150 mM NaCl, 1 % Triton X-100, 1 % BSA, 40 µg PMSF ml1]. Immunoprecipitation was done by using 3 µl antiserum (anti-JE virus hyperimmune ascitic fluid, non-immune ascitic fluid or anti-dengue 2 hyperimmune ascitic fluid) with samples kept at 4 °C overnight. Immunoprecipitated proteins were recovered by using Pansorbin (Calbiochem), followed by washing the reactions and preparation and analysis of the recovered proteins on 13 % SDS-PAGE gels as described previously (Chambers et al., 1999
, 2003
). Proteins were visualized by fluorography.
Mouse experiments.
ICR mice were purchased from Harlan SpragueDawley (Indianapolis, IN, USA) and handled in accordance with institutional guidelines on the care and use of laboratory animals. Mice were used for immunization at 3 weeks of age, using intraperitoneal inoculation of JE/dengue 2 virus. For immunization/challenge experiments, mice were inoculated with JE/dengue 2 viruses at 3 weeks of age and challenged at 23 weeks post-immunization by intracerebral injection of neuroadapted dengue 2 virus, as described previously (Chambers et al., 2003
). Mice were observed until moribund and then euthanized, or otherwise sacrificed after 4 or 8 weeks, and sera were collected for measurement of neutralizing-antibody titres. Neurovirulence testing was done in mice at 4 weeks of age by using intracerebral inoculation.
| RESULTS |
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Antigenic properties of recovered viruses
In tests of neutralization specificity (Table 1
), both the JE Nakayama parental virus and the JE-XJN clone were neutralized by JE virus hyperimmune ascitic fluid at high dilutions. These viruses were not neutralized by non-immune ascitic fluid and only weakly by neutralizing mAb against dengue 2 virus. Dengue 2 virus was neutralized efficiently by the dengue 2-specific mAb, but not by non-immune ascitic fluid or JE hyperimmune ascitic fluid. Two clones of JE/dengue 2 virus were neutralized by anti-dengue 2 mAb. End-point dilutions for 90 % plaque reduction were lower than those observed for dengue 2 virus, although 50 % plaque-reduction end points were similar. Sequence variations between the dengue 2 and JE/dengue 2 viruses may be responsible for the difference in neutralization activity of the mAb observed here, as the E proteins represent different strains of dengue 2 virus. The JE/dengue 2 viruses were not neutralized efficiently by non-immune ascitic fluid or by anti-JE virus hyperimmune ascitic fluid.
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Growth properties of JE and JE/dengue 2 viruses
The growth kinetics of the JE-XJN virus, two clones of the JE/dengue 2 virus and the parental dengue 2 virus were compared in LLC-MK2, BHK and C6/36 cells (Fig. 3
). In separate experiments, the JE Nakayama virus and JE-XJN virus were compared for growth properties in these cell lines, and no significant differences in growth properties between these two viruses were observed (data not shown).
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In LLC-MK2 cells (Fig. 3b
), the JE-XJN virus reached a peak titre of 6.25 log p.f.u. ml1 at 60 h post-infection. The JE/dengue 2 clones produced virus less rapidly than JE-XJN and reached lower peak titres of only 5 log p.f.u. ml1 between 48 and 60 h post-infection. Dengue 2 virus exhibited a slower rate of virus production than JE/dengue 2 and JE-XJN viruses, but eventually generated a peak virus titre intermediate between those of the other viruses (5.5 p.f.u. ml1 at 84 h post-infection).
In C6/36 cells (Fig. 3c
), the growth kinetics of JE virus and the JE/dengue 2 viruses were similar to one another over the first 72 h post-infection, but JE virus eventually reached a peak titre of 7 log p.f.u. ml1 at 120 h, whereas the JE/dengue 2 virus did not reach more than 6.25 log p.f.u. ml1 at 72 h. Dengue 2 virus yields were lower than those of the other viruses over the initial 72 h and the maximum virus yield detected (6.5 log p.f.u. ml1) occurred at the last time point tested. Differences observed in virus production among the viruses tested in these experiments were judged to be significant based on the very small variability observed for mean and standard deviations determined for each sample.
Mouse neurovirulence testing
Neurovirulence of the JE/dengue 2 virus was initially evaluated by intracerebral inoculation of 4-week-old ICR mice. Three different plaque-purified isolates (1.1, 3.1 and 4.1) were tested in these experiments (Table 2
). At doses in the range of 34 log p.f.u., there was only subtotal mortality, with 70, 6064 and 83 % mortality for clones 1.1, 4.1 and 3.1, respectively. Clones 3.1 and 4.1 were tested in dose-ranging experiments down to as low as 1 log p.f.u. Mortality varied between 20 and 60 % over the dose range tested. At the lowest dose (14 p.f.u.), mortality rates of between 20 and 40 % were observed for each clone. Mean survival times of mice succumbing to these infections ranged from 5 to 7 days among various doses, with an overall range of 411 days.
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| DISCUSSION |
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The JE-XJN clone was used to construct a chimeric JE/dengue 2 virus containing the structural proteins prM and E of dengue 2 virus in the JE Nakayama background. JE/dengue 2 virus exhibited antigenic properties characteristic of the dengue 2 E protein. Plaque-purified clones of this virus exhibited a small plaque phenotype of approximately 1 mm in size, only detectable on SW-13 cells, and growth properties differed among various cell lines. JE/dengue 2 virus replicated less efficiently than the parental JE virus in all cell lines, but generally similarly to dengue 2 virus. In C6/36 cells, JE/dengue 2 virus yielded lower peak titres than JE and dengue 2 viruses. This suggests that the presence of the dengue prM and E proteins contributes to less efficient growth of the JE/dengue 2 viruses compared with JE virus, although the viruses were still able to replicate to peak titres of between 5 and 6 log p.f.u. ml1. Studies with other chimeric viruses have shown some reduction in replication efficiency in C6/36 cells, although the degree of impairment is variable (Caufour et al., 2001
; Huang et al., 2000
; Mathenge et al., 2004
; Pletnev & Men, 1998
; Pletnev et al., 1992
, 2001
, 2002
). In LLC-MK2 cells, dengue 2 virus exhibited reduced kinetics of virus production compared with JE-XJN and JE/dengue 2 viruses. The dengue 2 prM and E proteins may contribute to less efficient virus production, due to effects on virus entry and spread at the low multiplicities used in these experiments. The less efficient virus production for JE/dengue 2 virus compared with JE-XJN is consistent with this hypothesis, although virus-specific factors contributed by JE-XJN compensate for the deleterious effects of the dengue structural proteins during the early stages of JE/dengue 2 infection in this cell line. Overall, the results with JE/dengue 2 are generally similar to these reports and do not indicate any unexpected cell-culture properties with this chimeric virus, other than the small plaque size.
In neurovirulence testing in 4-week outbred mice, independent plaque isolates of the JE/dengue 2 virus exhibited similar profiles, characterized by only a moderate level of neurovirulence, with subtotal mortality observed at doses as high as 3.64.0 log p.f.u. and dose-dependent effects on mortality at lower doses. Lack of uniform mortality in mice over this dose range is notable and suggests an attenuated phenotype of JE/dengue 2 virus that could be related to restricted replicative capacity of this virus in mouse tissues. Attenuating effects on neurovirulence have been observed for other flavivirus chimeras in which the prME regions of dengue virus strains have been substituted into the genome of otherwise neurovirulent viruses, such as Yellow fever virus or JE virus (Caufour et al., 2001
; Chambers et al., 1999
, 2003
; Mathenge et al., 2004
). In the case of the chimeric yellow fever/dengue viruses, the degree of attenuation is profound. However, similarly to results with JE/dengue 4 virus (Mathenge et al., 2004
), we observed that the prME region of dengue 2 is inadequate to attenuate JE virus fully for neurovirulence in young adult mice. This may be due to the higher intrinsic level of virulence associated with JE virus in this particular model system. There is not expected to be any contribution of the dengue 2 prME genes to the neurovirulence properties of the JE/dengue 2 virus, as the parental dengue 2 strain (PUO-218) is highly attenuated for neurovirulence, even in 3-day-old mice (Gualano et al., 1998
). In contrast, JE virus is highly neurovirulent in adult mice, with LD50 values often well below 1 p.f.u. (Ni & Barrett, 1996
, 1998
). This suggests that genetic determinants within the JE Nakayama virus genome govern the mouse neurovirulence properties of the JE/dengue 2 virus.
JE/dengue 2 virus did not exhibit any mortality in 3-week-old mice after intraperitoneal inoculation at doses as high as 4.5 log p.f.u., and the vast majority of such mice developed neutralizing antibodies against dengue 2 virus. Although additional experiments are needed to fully characterize the neuroinvasiveness of JE/dengue 2 virus, the present data suggest that this chimeric virus lacks this property at doses sufficient to immunize mice. This is presumably due to the effects of the dengue 2 prME proteins derived from the dengue 2 PUO-218 strain, which is highly attenuated for mouse neuroinvasiveness (Gualano et al., 1998
). In contrast, JE Nakayama virus is neuroinvasive for young adult mice at doses well below those used in our experiments with JE/dengue 2 virus (Cao et al., 1995
; Lee & Lobigs, 2002
; Ni & Barrett, 1996
). The neutralizing-antibody responses induced by JE/dengue 2 virus were variable in magnitude and did not reach peak levels until 12 weeks post-inoculation. The long interval required for the development of this peak response in mice inoculated with JE/dengue 2 virus may result from inefficient virus replication in these mice, resulting in a low antigen load and delayed induction of the peak immune response.
Peripheral inoculation of mice with JE/dengue 2 virus elicited protection against encephalitis caused by neuroadapted dengue 2 virus. This occurred despite the slow appearance of neutralizing antibodies (Table 3
). Mock-immunized survivors also generated significant levels of neutralizing antibodies. The role of these responses in protecting mock-infected mice from fatal encephalitis is unclear, as age-related factors also contribute to resistance against dengue. However, the levels of post-challenge neutralizing antibodies detected in surviving JE/dengue 2-immunized mice were greater than those of mock-immunized survivors and continued to rise between 4 and 8 weeks post-challenge. This suggests an induction of memory B-cell responses by the immunization as early as 3 or 4 weeks following infection, even though neutralizing-antibody responses were low for up to 7 weeks post-inoculation (Table 3
). The exact role of this antibody response versus a cellular immune response in providing protection against dengue virus in this model remains to be determined.
JE virus causes an acute encephalitis that can be prevented by vaccination with live-attenuated JE virus [JE-SA14-14-2, (Chinese vaccine strain; Eckels et al., 1988
)] or with inactivated vaccine [JE-VAX (Tsai, 1994
)]. The attenuation phenotype of the live-attenuated JE-SA14-14-2 vaccine is very stable, contributing to the successful use of the vaccine in China over the last decade (Halstead, 2002
). The genetic basis of attenuation of JE virus virulence has not been established, although sequence data suggest that determinants in both the structural and non-structural regions of the genome are responsible (Ni et al., 1994
, 1995
; Nitayaphan et al., 1990
).
The JE-XJN and JE/dengue 2 clones represent experimental systems that can be used for analysis of attenuating determinants in the JE virus genome. This may lead to the engineering of chimeric viruses with acceptable safety profiles for expression of dengue and other flavivirus antigens in the context of experimental vaccines. For instance, the partial mouse neurovirulence exhibited by the JE/dengue 2 virus suggests that additional nucleotide and/or amino acid determinants outside the prME region may govern the virulence of JE virus in this model. Systematic evaluation of candidate determinants in the JE virus capsid or non-structural regions may yield JE/dengue 2 viruses with better attenuation profiles for investigation as experimental vaccines against dengue virus.
| ACKNOWLEDGEMENTS |
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Received 3 February 2006;
accepted 18 July 2006.
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