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1 Department of Molecular Cell Biology, Leiden University Medical Center, Wassenaarseweg 72, 2333 AL Leiden, The Netherlands
2 Department of Physiological Chemistry and Center for Biomedical Genetics, University Medical Center, Universiteitsweg 100, 3508 AB Utrecht, The Netherlands
Correspondence
Rob C. Hoeben
R.C.Hoeben{at}lumc.nl
| ABSTRACT |
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The GenBank/EMBL/DDBJ accession numbers for the coding sequences of the pTP and Pol genes of the FAdV-1 OTE isolate are AY421748 and AY421749, respectively; those for the genomic sequences of the pTP and Pol coding regions of the OTE isolate are AY421752 and AY421753; those for the first 773 nt of the left genome end and 819 nt of the right genome end of the OTE isolate are AY421750 and AY421751, respectively.
Present address: Netherlands Institute for Brain Research, Meibergdreef 33, 1105 AZ Amsterdam, The Netherlands. ![]()
Present address: Bijvoet Center for Biomolecular Research, Utrecht University, Padualaan 8, 3584 CH Utrecht, The Netherlands. ![]()
| INTRODUCTION |
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The first step of DNA replication is covalent coupling of dCMP to the pre-initiation complex. This step is well conserved. All mastadenoviruses and atadenoviruses characterized to date have a C residue at the 5' end of their genome, suggesting a preference of pTP to bind dCMP. This concept is supported by the work of King & van der Vliet (1994)
, who showed that mutation of G4 in the template strand blocked replication initiation of HAdV-5 in vitro. Even in the absence of any template DNA, pTP-CPol complexes were formed (King & van der Vliet, 1994
). The preference of pTP to bind dCMP was reduced in the presence of manganese ions in the replication-initiation assay, suggesting that structural factors govern the template specificity.
Strikingly, whereas most aviadenoviruses conform to the C rule, there is an exception in fowl adenovirus 1 (FAdV-1). Isolates PHELPS (GenBank accession no. U46933) of the chicken embryo lethal orphan (CELO) disease-causing Ad and KUR (GenBank accession no. M57604) are unique among Ads in that their genomes start with the sequence 5'-GATGATG. Alignment of the KUR sequence showed that it was 99 % identical to that of isolate PHELPS within the first 168 bp of the right ITR. Intriguingly, another FAdV-1 isolate, OTE (GenBank accession nos K00939 and K00940), of which only the sequence of the first 68 bp of the ITR has been published (Shinagawa et al., 1983
), is distinct from PHELPS and KUR in that it conforms to the Ad convention and starts with the sequence 5'-CATCATC.
The genome sequence of the PHELPS isolate was determined completely by Chiocca et al. (1996)
. The virus lacks homology with the E1, E3 and E4 regions of the mastadenoviruses, as well as the genes encoding pV and pIX. The E2 and late gene clusters of PHELPS are homologous to those of the mastadenoviruses. Open reading frames (ORFs) homologous to HAdV-5 DBP, pTP and Pol could be identified in PHELPS (GenBank accession nos AAC54914
[GenBank]
, AAC54905
[GenBank]
and AAC54904
[GenBank]
, respectively). The 54 bp ITRs are relatively short in PHELPS compared with the 103 bp found in HAdV-5.
The unconventional occurrence of G nucleotides at positions 1, 4 and 7 of the ITRs of some FAdV-1 isolates, as well as marked heterogeneity between different FAdV-1 isolates, is intriguing. Here, we confirmed the sequence difference between the FAdV-1 isolates PHELPS and OTE and characterized their pTP and Pol genes. In addition, we provide evidence that these viruses have a relaxed, rather than a changed, template specificity.
| METHODS |
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ITR sequence determination.
Virus particles from the freezethaw lysates were purified by CsCl density-gradient centrifugation as described previously (Fallaux et al., 1996
). Isolated particles were incubated with proteinase K in 0·2 % SDS, 8 mM EDTA, and viral DNA was extracted by phenol/chloroform and ethanol precipitation.
Primer-extension assay.
Primer CELO-PE was radiolabelled by using T4 polynucleotide kinase and [
-32P]ATP and elongated with T7 DNA polymerase in the presence of dATP, dTTP and either dCTP or dGTP. Elongated primers were size-fractionated by electrophoresis on an 8 % polyacrylamide gel. For detection of the radiolabelled fragments, Kodak XAR film was used.
Terminal transferase.
A poly(A) tail was added to the 3' end of the viral termini by using terminal transferase (Promega). The first 800 bp of the left ITR was amplified by PCR using the primers MiniCeloL-AS and oligo-dT-20 (see Table 1
). The PCR fragments were cloned in pCR2.1+ by using a TA cloning kit (Invitrogen) and used for sequence analysis.
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Isolation and sequencing of PHELPS and OTE DNA.
For the isolation of pTP and Pol genes, viral DNA was isolated as described above. The pTP genes were isolated by using the primers CpTP-as and CtPT-s (see Table 1
) in a standard PCR. The 2·0 kb PCR product was digested with HindIII and EcoRI (MBI Fermentas), cloned in a 5·4 kb HindIII/EcoRI fragment of pCDNA3.1+ and sequenced. Differences from the published PHELPS pTP sequence were confirmed by direct sequencing of viral DNA.
For OTE Pol, a 3·9 kb PCR fragment was amplified by using the primers CELO-pol-s and CELO-pol-as and cloned in a 2·7 kb EcoRV-digested pIC20H vector. This vector was used to sequence the OTE Pol gene.
Minireplicon assay.
The left and right genome ends of FAdV-1 OTE were PCR-amplified with the primers BamITR-C or BamITR-G together with MiniCeloL-AS for the left end and MiniCeloR-S for the right end. The left and right genome ends of FAdV-1 PHELPS were PCR-amplified with the primers BamITR-G together with MiniCeloL-AS for the left end and MiniCeloR-S for the right end (see Table 1
; BamHI sites are underlined in the primer sequence). By virtue of the similarity in the left ITR and right ITR fragments, both products could be linked in a second PCR using either BamITR-C or BamITR-G primers and Pfu polymerase (Stratagene). The resulting 2 kb PCR fragment was cloned in a pCR2.1+ vector using a TA cloning kit (Invitrogen). The resulting plasmids, miniOTE-C, miniOTE-G and miniPHELPS-G, were digested with NruI and ligated with a 2 kb cytomegalovirus promotergreen fluorescent protein (CMVGFP) cassette. The CMVGFP cassette was synthesized by PCR from pShuttleGFP using the primers cGFP-for and cGFP-rev and Pfu polymerase. The GFP cassette is used as a marker for transfection efficiency.
Subconfluent cultures of LMH cells were infected with OTE or PHELPS (m.o.i. of 1) in DMEM supplemented with 2 % HS, antibiotics and 3 g glucose l1 in a 5 % CO2 atmosphere at 37 °C. Two hours post-infection, inoculum was replaced with DMEM supplemented with 8 % FCS, antibiotics and 3 g glucose l1 in a 5 % CO2 atmosphere at 37 °C. In both of these media, antibiotic concentrations were 100 000 IU penicillin l1 and 100 mg streptomycin l1. Six hours post-infection, cells were transfected with 1 µg BamHI-digested miniOTE-C, miniOTE-G or miniPHELPS-G replicon plasmid with the aid of jetPEI (Polyplus-transfection). Transfection efficiencies of 4050 % were achieved routinely. Viral and minireplicon DNA was isolated 54 h post-infection from LMH cells by using the small molecular DNA isolation procedure of Hirt (1967)
. From the isolated DNA, 10 µg aliquots were either digested with DpnI or MboI or left undigested, and loaded on a 1 % agarose gel. After electrophoresis and blotting, the minireplicon fragments were detected by Southern analysis using a radiolabelled GFP fragment as probe. For detection of the minireplicon backbone, a radioactive probe specific for the amp gene was used. It was noted that the presence of adeno-associated virus in the assay severely reduced the efficiency of minireplicon replication.
| RESULTS |
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In PHELPS, ORFs have been annotated for pTP (E2B pTP, GenBank accession no. AAC54905
[GenBank]
.1) and polymerase (E2B Pol, GenBank accession no. AAC54904
[GenBank]
.1). However, in HAdV-5 and HAdV-2, translation of the pTP and Pol messages is complex. The pTP and Pol proteins are translated from distinct messages, but use the same translation start codon. The majority of the coding sequences from pTP and Pol are located in large, distinct exons, but the translation-initiating ATG is derived from a common, upstream exon. The sequences preceding the first ATG of the large exons are essential for the activity of both proteins (Shu et al., 1987
, 1988
).
To determine the structure of the Pol and pTP mRNAs, RT-PCR on RNA isolated from OTE-infected LMH cells was used to characterize the presence of the upstream exon homologous to that of the human Ads. For cDNA synthesis, we used primers RTCpol-rev for Pol and RTCptp-rev for pTP, both located downstream of the first ATG in the large exon. The forward primer (CeloRTptp-for1) was used for both OTE pTP and Pol mRNAs and was based on sequence similarity in the shared 5' untranslated region (UTR) of HAdV-5 pTPPol mRNA and PHELPS genomic DNA (Fig. 3
). The PCR products were cloned and the resulting plasmid clones were sequenced. Splice sites were predicted by aligning the cDNA fragments against the genomic sequence of PHELPS by using the Sim4 algorithm (Florea et al., 1998
). Similar to HAdV-5, OTE pTP and Pol use a splice-donor site 3 nt downstream of an ATG sequence (nt 15081 in the published PHELPS sequence). The splice-acceptor site for pTP is located 159 nt upstream of the annotated ORF (nt 12155 in the published PHELPS sequence). The resulting mRNA would encode a 630 aa pTP protein. This is 55 aa larger than the PHELPS pTP, encoded by the annotated pTP ORF (GenBank accession no. AAC54905
[GenBank]
.1). The additional N-terminal pTP sequence contains the motif [A]-[RHD]-[L]-[T]-[GN]-[Q], conserved in other pTP species. The splice-acceptor site of Pol is located 610 bp upstream of the ORF (identical to nt 10476 in PHELPS) inside the pTP ORF (Fig. 3
). However, unlike HAdV-5, translation starting from the ATG 6 nt upstream of the splice donor does not result in a bona fide Pol protein: whereas OTE and PHELPS Pol use the same splice donor, an alternative ATG must be used for the translation of Pol.
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Having established the putative ORFs, it was possible to compare the sequence of the OTE pTP and Pol with the published sequence of PHELPS and other Ads (Fig. 4a
). We noted two differences between our sequence of PHELPS pTP and the published sequence. Our PHELPS sequence contained Arg325Asn326 rather than Cys325 and Ser326 (numbered aa270 and aa271 in GenBank accession no. AAC54905
[GenBank]
.1). OTE and FAdV-10 are identical to our PHELPS sequence in this region. Only two differences were found between the pTP ORFs of PHELPS and OTE. PHELPS Val50 and Asp604 were changed to Leu and Glu, respectively, in OTE. These changes do not result in an altered amino acid charge. In addition, Val50 to Leu maps in the N-terminal part of the protein, which is unlikely to be involved in priming, considering the distance to the dNTP-binding site in TP and the relatively high affinity of the N-terminal pre-part of pTP for binding to the replication enhancer Oct-1 (Botting & Hay, 1999
). Taken together, these data suggest that the difference in initiating nucleotide is not caused by a functional change in TP activity.
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The sequence comparisons of the pTP and Pol genes of PHELPS and OTE did not reveal obvious differences that would explain the difference in template specificity. It is therefore tempting to speculate that the distinct differences at the origin of replication are not caused by a change of template specificity inherent to pTP and Pol, but rather that the FAdV-1 Ads have a relaxed specificity. This would allow replication initiation on different templates. As a result, the 5'-GATGATG and 5'-CATCATC of PHELPS and OTE, respectively, would be maintained simply by virtue of the availability of either one of their template sequences, and not by specificity of the pTP and/or Pol.
To test this hypothesis, we constructed minireplicon vectors (Hay et al., 1984
) that contain a CMVGFP expression cassette flanked by 802 bp of the left terminus of the genome and the last 1154 bp of the right end of the genome of OTE. The minireplicon is flanked by BamHI restriction sites to release it from the backbone, leaving only a single additional nucleotide 3' of the normal genome end of the template strand. Three versions of the minireplicons were generated: the miniOTE-C replicon contains the normal OTE termini, reading 5'-CATCATC, the miniOTE-G replicon harbours OTE ITR sequences, with the PHELPS sequence 5'-GATGATG at positions 17, and the miniPHELPS-G replicon contains the wild-type PHELPS ITRs. To study whether OTE could facilitate replication of the minireplicons, LMH cells were infected with OTE. Six hours post-infection, the cells were washed and BamHI-digested linear miniOTE-C and miniOTE-G replicons were introduced into the cells. Southern analyses were performed on MboI-, DpnI- or undigested low-molecular-mass DNA extracted from LMH cells 54 h post-infection, using a GFP-specific probe to detect minireplicon DNA (Fig. 5
). OTE is able to replicate both miniOTE-C and miniOTE-G replicon constructs with equivalent efficiency, as indicated by the DpnI-resistant band (Fig. 5a
). Quantification of minireplicon signals showed that 26 and 18 % of the total undigested material was replicated de novo for miniOTE-G and miniOTE-C, respectively. No hybridizing fragment is visible when a probe is used that detects the amp gene residing in the vector fragment (Fig. 5b
). This demonstrates clearly that the restriction endonuclease DpnI digested the unreplicated DNA to completion. In addition, it shows that generation of the unmethylated, DpnI-resistant fragments is dependent on the presence of the FAdV-1 ITR sequences. Furthermore, the expected restriction fragments could be detected in the MboI-digested lanes (Fig. 5a
), further indicating digestion of unmethylated DNA. The replication of minireplicons was strictly dependent on the presence of OTE, as a DpnI-resistant band or MboI-degradation products could not be detected in DNA isolated from non-infected cells. Similar results were obtained when PHELPS-infected LMH cells were cotransfected with miniOTE-C and miniOTE-G (Fig. 5c
). To exclude the possibility that differences in mobilization are caused by the sequence differences in the ITR sequence between PHELPS and OTE, a BamHI-digested miniPHELPS-G plasmid was transfected into PHELPS-infected cells. The replication efficiencies of miniOTE-C, miniOTE-G and miniPHELPS-G were similar. When the blot was hybridized with an amp probe to detect the backbone fragments, only degradation fragments were detected in the DpnI-digested lanes, confirming the complete digestion of input DNA (Fig. 5d
). These data demonstrate that both OTE and PHELPS can drive replication of minireplicons harbouring PHELPS 5'-GATGATG-containing ITRs, as well as minireplicons with the OTE 5'-CATCATC ITRs. This, together with the small differences in the sequences of the pTP and Pol genes, shows that the FAdV-1 viruses have relaxed their template specificity in the initiation of DNA replication.
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| DISCUSSION |
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In Ads, two mechanisms contribute to the stability of the DNA sequence at the origin of replication. Correct template replication depends on error-free replication. The proofreading activity of the Ad Pol ensures faithful replication of the Ad genomes. However, due to the presence of pTP at the 5' end of the synthesized strand, proofreading fails in the first 812 bp of the Ad ITR (King et al., 1997a
). To correct for deletions or mismatches, Ad utilizes a jumping-back mechanism. Small deletions of 1 or 2 nt can be corrected in this way without compromising replication, as was shown by King & Van der Vliet (1994)
. However, mutations of nt 6 (A to C) or nt 3 (A to C) in the template strand resulted in a clear reduction of elongation efficiency in in vitro assays. In contrast, mutation of nt 1 (G to A) did not affect replication efficiency. This suggests that the jumping-back mechanism can correct small deletions, but cannot prevent mismatch incorporation, at least at positions 3 and 6. The relevance of the jumping-back mechanism in preventing elongation of mismatched DNA in vivo remains to be determined. Despite these mechanisms, variations in the Ad ITR sequences have been reported, even within serotypes (e.g. in HAdV-4, see Fig. 1a
). Nevertheless, all known Ads contain a C residue at the 5' end of their ITRs, with the FAdV-1 isolates PHELPS and KUR as the sole exceptions. This suggests another mechanism to prevent mutation of the nucleotides at positions 1, 4 and 7. In vitro replication-initiation experiments demonstrate that template DNA where nt 4 is changed (C to A) did result in pTP-C formation (possibly initiated on nt 7), but failed to generate pTP-T complexes (King & van der Vliet, 1994
). Furthermore, no elongation occurred on this template. Therefore, HAdV-5 seems to have two independent mechanisms to ensure ITR integrity. On the one hand, template-dependent replication and the jumping-back mechanism ensure generation of bona fide top strands. In addition, the preference for binding dCMP of the pTPPol complex during replication initiation contributes to preventing mutations in the origin of replication.
This observation raised the question of how the different ITRs in the otherwise closely related strains PHELPS and OTE could have arisen. Obviously, the pTPPol complex derived from PHELPS must be able to bind dGMP as a substrate during initiation, whereas this complex in OTE uses dCMP and conforms to the conventional Ad initiation site. To test whether this could explain the template specificity, we sequenced the pTP (both OTE and PHELPS) and Pol (OTE) genes, determined the splice sites for OTE pTP and Pol and compared both OTE and PHELPS sequences with the published PHELPS sequence. As in HAdV-5, both pTP and Pol mRNAs are spliced and share the splice-donor site. The OTE pTP splice-acceptor site is located upstream of the pTP ORF as annotated for PHELPS, extending the pTP sequence by 55 aa. These additional amino acids have been shown to be essential for the biological activity of HAdV-5 pTP. As the additional amino acids share a conserved motif, [A]-[RHD]-[L]-[T]-[GN]-[Q], with other pTPs, the amino-terminal extended part is probably important for the biological activity of OTE and PHELPS pTP. The splice-acceptor site in OTE Pol is located 159 bp upstream of the annotated Pol ORF in PHELPS. The ATG translation-initiation codon in the upstream exon cannot be used for translation of the Pol message, as it employs another reading frame. Therefore, unlike HAdV-5 Pol, translation must initiate at the next start codon, located 208 bp downstream of the splice-acceptor site, resulting in an additional 134 aa compared with the Pol ORF annotated for PHELPS. The additional sequences do not encode domains conserved in other Ad Pol proteins. The splice sites for pTP and Pol, as well as the alternative start codon of Pol, confirm the predictions that Davison et al. (2003)
made for PHELPS.
Sequence comparison of our PHELPS pTP gene with the published PHELPS sequence revealed two amino acid differences. These amino acids are identical in OTE pTP. Comparison of PHELPS and OTE pTP revealed only two amino acid changes: PHELPS Val50 and Asp604 were changed in OTE to Leu and Glu, respectively. These amino acid differences have similar chemical properties or are located in the precursor part of the protein and therefore, most likely, do not cause substrate specificity. The striking similarities of the OTE and PHELPS pTP and Pol genes suggest a relaxed sequence specificity, rather than a distinct specificity, of the pTPPol complex at replication initiation.
To test this hypothesis, we constructed the minireplicons miniOTE-C, containing wild-type OTE ITRs, and miniOTE-G, where nt 1, 4 and 7 in the top strand of the ITR have been replaced with Gs. Replication of linearized minireplicon constructs was tested in a replication assay that detects the absence of dam methylation in de novo-replicated DNA. The results confirmed the ability of OTE and PHELPS to replicate ITRs starting with cytidine or guanidine residues with equal efficiencies. This replication was independent of the minor differences between PHELPS and OTE ITR sequences and specific for the minireplicon constructs, as a control plasmid lacking pTPPol-binding domains did not replicate (data not shown).
The relaxed template specificity of the pTPPol complex is a prerequisite for alterations in the FAdV-1 ITR to occur, but can only partially explain the altered ITR in PHELPS. Without the relaxed template specificity of the pTPPol complex, changes in the origin of replication are not possible. Therefore, the relaxation of the substrate specificity in the FAdV-1 replication machinery should have preceded the generation of the ITR sequences present in PHELPS and KUR.
The relaxed specificity of FAdV-1 may be exploited for the generation of mobilization-resistant adenoviral vectors for gene therapy. Vectors based on human Ads, in which the C residues in positions 1, 4 and 7 of the top strand are replaced with G residues, would be resistant to mobilization by wild-type Ads (Rademaker et al., 2002
). Indeed, transfection of HAdV-5 vectors that harbour the sequence 5'-GATGATG at their genome ends did not result in the formation of plaques, as these genomes are unable to replicate in helper cells. In contrast, wild-type ITR-containing controls readily formed plaques and induced CPE (H. J. Rademaker, D. J. M. Van den Wollenberg & R. C. Hoeben, unpublished data), underlining the feasibility of this approach.
| ACKNOWLEDGEMENTS |
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| REFERENCES |
|---|
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|
|---|
Botting, C. H. & Hay, R. T. (1999). Characterisation of the adenovirus preterminal protein and its interaction with the POU homeodomain of NFIII (Oct-1). Nucleic Acids Res 27, 27992805.
Carusi, E. A. (1977). Evidence for blocked 5'-termini in human adenovirus DNA. Virology 76, 380394.[CrossRef][Medline]
Challberg, M. D. & Kelly, T. J., Jr (1981). Processing of the adenovirus terminal protein. J Virol 38, 272277.
Challberg, M. D. & Rawlins, D. R. (1984). Template requirements for the initiation of adenovirus DNA replication. Proc Natl Acad Sci U S A 81, 100104.
Chiocca, S., Kurzbauer, R., Schaffner, G., Baker, A., Mautner, V. & Cotten, M. (1996). The complete DNA sequence and genomic organization of the avian adenovirus CELO. J Virol 70, 29392949.[Abstract]
Davison, A. J., Benk
, M. & Harrach, B. (2003). Genetic content and evolution of adenoviruses. J Gen Virol 84, 28952908.
Dekker, J., Kanellopoulos, P. N., Loonstra, A. K., van Oosterhout, J. A. W. M., Leonard, K., Tucker, P. A. & van der Vliet, P. C. (1997). Multimerization of the adenovirus DNA-binding protein is the driving force for ATP-independent DNA unwinding during strand displacement synthesis. EMBO J 16, 14551463.[CrossRef][Medline]
Desiderio, S. V. & Kelly, T. J., Jr (1981). Structure of the linkage between adenovirus DNA and the 55,000 molecular weight terminal protein. J Mol Biol 145, 319337.[CrossRef][Medline]
Enomoto, T., Lichy, J. H., Ikeda, J.-E. & Hurwitz, J. (1981). Adenovirus DNA replication in vitro: purification of the terminal protein in a functional form. Proc Natl Acad Sci U S A 78, 67796783.
Fallaux, F. J., Kranenburg, O., Cramer, S. J., Houweling, A., Van Ormondt, H., Hoeben, R. C. & Van der Eb, A. J. (1996). Characterization of 911: a new helper cell line for the titration and propagation of early region 1-deleted adenoviral vectors. Hum Gene Ther 7, 215222.[Medline]
Florea, L., Hartzell, G., Zhang, Z., Rubin, G. M. & Miller, W. (1998). A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res 8, 967974.
Guggenheimer, R. A., Stillman, B. W., Nagata, K., Tamanoi, F. & Hurwitz, J. (1984). DNA sequences required for the in vitro replication of adenovirus DNA. Proc Natl Acad Sci U S A 81, 30693073.
Harris, M. P. & Hay, R. T. (1988). DNA sequences required for the initiation of adenovirus type 4 DNA replication in vitro. J Mol Biol 201, 5767.[CrossRef][Medline]
Hatfield, L. & Hearing, P. (1993). The NFIII/OCT-1 binding site stimulates adenovirus DNA replication in vivo and is functionally redundant with adjacent sequences. J Virol 67, 39313939.
Hay, R. T. (1985). The origin of adenovirus DNA replication: minimal DNA sequence requirement in vivo. EMBO J 4, 421426.[Medline]
Hay, R. T., Stow, N. D. & McDougall, I. M. (1984). Replication of adenovirus mini-chromosomes. J Mol Biol 175, 493510.[CrossRef][Medline]
Hirt, B. (1967). Selective extraction of polyoma DNA from infected mouse cell cultures. J Mol Biol 26, 365369.[CrossRef][Medline]
Karlin, S. & Altschul, S. F. (1990). Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc Natl Acad Sci U S A 87, 22642268.
King, A. J. & van der Vliet, P. C. (1994). A precursor terminal proteintrinucleotide intermediate during initiation of adenovirus DNA replication: regeneration of molecular ends in vitro by a jumping back mechanism. EMBO J 13, 57865792.[Medline]
King, A. J., Teertstra, W. R., Blanco, L., Salas, M. & van der Vliet, P. C. (1997a). Processive proofreading by the adenovirus DNA polymerase. Association with the priming protein reduces exonucleolytic degradation. Nucleic Acids Res 25, 17451752.
King, A. J., Teertstra, W. R. & van der Vliet, P. C. (1997b). Dissociation of the protein primer and DNA polymerase after initiation of adenovirus DNA replication. J Biol Chem 272, 2461724623.
Lally, C., Dörper, T., Gröger, W., Antoine, G. & Winnacker, E.-L. (1984). A size analysis of the adenovirus replicon. EMBO J 3, 333337.[Medline]
Lawrence, C. E., Altschul, S. F., Boguski, M. S., Liu, J. S., Neuwald, A. F. & Wootton, J. C. (1993). Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment. Science 262, 208214.
Mul, Y. M., Verrijzer, C. P. & van der Vliet, P. C. (1990). Transcription factors NFI and NFIII/oct-1 function independently, employing different mechanisms to enhance adenovirus DNA replication. J Virol 64, 55105518.
Rademaker, H. J., Abou El Hassan, M. A., Versteeg, G. A., Rabelink, M. J. W. E. & Hoeben, R. C. (2002). Efficient mobilization of E1-deleted adenovirus type 5 vectors by wild-type adenoviruses of other serotypes. J Gen Virol 83, 13111314.
Rawlins, D. R., Rosenfeld, P. J., Wides, R. J., Challberg, M. D. & Kelly, T. J., Jr (1984). Structure and function of the adenovirus origin of replication. Cell 37, 309319.[CrossRef][Medline]
Rekosh, D. M. K., Russell, W. C., Bellet, A. J. D. & Robinson, A. J. (1977). Identification of a protein linked to the ends of adenovirus DNA. Cell 11, 283295.[CrossRef][Medline]
Robinson, A. J., Younghusband, H. B. & Bellett, A. J. D. (1973). A circular DNAprotein complex from adenoviruses. Virology 56, 5469.[CrossRef][Medline]
Schuler, G. D., Altschul, S. F. & Lipman, D. J. (1991). A workbench for multiple alignment construction and analysis. Proteins 9, 180190.[CrossRef][Medline]
Shinagawa, M., Ishiyama, T., Padmanabhan, R., Fujinaga, K., Kamada, M. & Sato, G. (1983). Comparative sequence analysis of the inverted terminal repetition in the genomes of animal and avian adenoviruses. Virology 125, 491495.[CrossRef][Medline]
Shu, L. M., Horwitz, M. S. & Engler, J. A. (1987). Expression of enzymatically active adenovirus DNA polymerase from cloned DNA requires sequences upstream of the main open reading frame. Virology 161, 520526.[CrossRef][Medline]
Shu, L., Pettit, S. C. & Engler, J. A. (1988). The precise structure and coding capacity of mRNAs from early region 2B of human adenovirus serotype 2. Virology 165, 348356.[CrossRef][Medline]
Smart, J. E. & Stillman, B. W. (1982). Adenovirus terminal protein precursor. Partial amino acid sequence and the site of covalent linkage to virus DNA. J Biol Chem 257, 1349913506.
Stillman, B. W. & Tamanoi, F. (1983). Adenoviral DNA replication: DNA sequences and enzymes required for initiation in vitro. Cold Spring Harbor Symp Quant Biol 47, 741750.[Medline]
Tamanoi, F. & Stillman, B. W. (1983). Initiation of adenovirus DNA replication in vitro requires a specific DNA sequence. Proc Natl Acad Sci U S A 80, 64466450.
Tamanoi, F. & Stillman, B. W. (1984). The origin of adenovirus DNA replication. Curr Top Microbiol Immunol 109, 7587.[Medline]
van Bergen, B. G. M., van der Ley, P. A., van Driel, W., van Mansfeld, A. D. M. & van der Vliet, P. C. (1983). Replication of origin containing adenovirus DNA fragments that do not carry the terminal protein. Nucleic Acids Res 11, 19751989.
Verrijzer, C. P., Kal, A. J. & Van der Vliet, P. C. (1990). The DNA binding domain (POU domain) of transcription factor oct-1 suffices for stimulation of DNA replication. EMBO J 9, 18831888.[Medline]
Wang, K. & Pearson, G. D. (1985). Adenovirus sequences required for replication in vivo. Nucleic Acids Res 13, 51735187.
Wides, R. J., Challberg, M. D., Rawlins, D. R. & Kelly, T. J. (1987). Adenovirus origin of DNA replication: sequence requirements for replication in vitro. Mol Cell Biol 7, 864874.
Received 11 July 2005;
accepted 14 November 2005.
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