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Viral Oncogenesis Group, Division of Microbiology, Institute for Animal Health, Compton, Berkshire RG20 7NN, UK
Correspondence
Venugopal Nair
venu.gopal{at}bbsrc.ac.uk
| ABSTRACT |
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| INTRODUCTION |
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The oncogenic specificity of ALV subgroups has been ascribed to differences in env or the long terminal repeat (LTR) of the virus (Brown et al., 1988
), reflecting the two fundamental aspects of retroviral infection, attachment and replication. Virus attachment and entry are mediated by the viral envelope glycoprotein through specific binding to cell-surface receptors. Virus replication is regulated by the LTR, which drives viral gene expression in association with various cis-acting elements in eukaryotic cells (Ruddell et al., 1989
). Studies carried out by using chimeric viruses have demonstrated that the viral envelope is a major determinant of cell tropism (Brown & Robinson, 1988
; Chesters et al., 2002
).
The genome structure of ALV-J shows overall similarity to that of other subgroups, with the gag and pol genes showing over 96 % sequence identity to those of subgroups AE (Bai et al., 1995
). The LTR region of ALV-J also showed >90 % sequence identity to that of other ALV subgroups. However, the sequence of ALV-J env showed much less similarity, although it showed a close relationship to that of a novel group of chicken endogenous retroviral elements designated EAV-HP (Benson et al., 1998
; Smith et al., 1999
; Sacco et al., 2000
). This unique structure of ALV-J, consisting of a divergent env gene and a conserved ALV backbone, suggests that it has emerged by recombination (Bai et al., 1995
). As retroviral envelopes mainly act as ligands for receptor binding, the tropism of ALV subgroups for cells of different lineages is thought to be related to the distribution of the specific virus receptors on different cell types. Recently, the chicken Na+/H+ exchanger type 1 has been identified as the specific receptor for ALV-J (Chai & Bates, 2006
). As this receptor is distributed over a wide range of cell types, including some that are not transformed by ALV-J, it is unlikely that the envelopereceptor interaction alone is the single determinant in the lineage-specific oncogenicity of these viruses.
Yet another feature unique to the ALV-J sequence is the presence of a hairpin stemloop structure (Fig. 1
) called the E element in the 3' untranslated region (UTR) (Bai et al., 1995
). The function of the E element, homologous to the XSR (exogenous virus-specific region) found in certain strains of Rous sarcoma virus (RSV) (Bizub et al., 1984
; Laimins et al., 1984
), is not known. In RSV, it has been suggested that the XSR contributes to the differences in disease spectra, possibly through an enhancer function (Laimins et al., 1984
), but its absence in many other oncogenic sarcoma viruses indicates that it may not be essential for the induction of sarcomas (Bizub et al., 1984
). However, the role of the E element in the oncogenicity of ALV-J strains is far from clear. Isolation of natural ALV-J strains with deletions in the 3' UTR from cases of ML would suggest that the E element may not be essential for oncogenicity (Cui et al., 2003
). Conversely, the presence or absence of the E element was thought to account for the differences in the induction of tumours between two naturally occurring recombinant ALV-J/A chimeric viruses (Lupiani et al., 2003
). Both of these studies used field virus stocks, which may contain viruses with multiple sequence changes that may be associated with the differences in pathogenicity. Hence, for a more precise analysis of the role of the E element in ALV-J oncogenesis, we chose to use virus derived from the molecular clone of HPRS-103 from which the E element was deleted.
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| METHODS |
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Strategy for deletion of the E element.
For deletion of the E element, the ClaISpeI fragment from the full-length HPRS-103 provirus clone (Bai et al., 1995
) was replaced with a fusion product of two PCR fragments containing overlapping sequences spanning the deleted region. The principle of the procedure has been described in detail elsewhere (Higuchi, 1989
) and is shown in Fig. 2
. Briefly, two PCR products spanning the region to be deleted were produced by using primer pairs F1/R1 and F2/R2. Primer R1 included sequences immediately upstream of the first nucleotide of the E element and sequences immediately downstream of the last nucleotide. Primer F2 similarly spanned the region to be deleted by overlapping the 5' end of R1. The two products with overlapping sequences at their termini were combined in equimolar amounts and amplified with primers F1 and R2 to obtain the PCR product with the deleted E element. The ClaISpeI fragment derived from the PCR product was cloned into the equivalent region of the HPRS-103 full-length proviral clone to generate the pHPRS-103
E deletion mutant.
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E virus stock through a vein in the chorioallantoic membrane. Infection of hatched chicks was carried out by intra-abdominal inoculation of 5x104 TCIU of the two viruses. Control birds were injected with uninfected tissue-culture fluid. Cloacal swabs were taken from all embryo-infected birds and tested for infection status by direct p27 ELISA. Serum samples collected from post-hatch-infected birds 7 weeks after infection were tested by using a microneutralization test (Fadly & Witter, 1998
Analysis of tumour DNA.
Frozen tumour tissues collected during post-mortem examination of infected birds were used for DNA extraction. Homogenized tissues were digested with proteinase K and ribonuclease A (Sigma-Aldrich), and high-molecular-mass DNA was obtained by phenol/chloroform extraction and ethanol precipitation using standard methods (Sambrook & Russell, 2001
). DNA samples were initially analysed by F3/R3 PCR to confirm deletion of the E element. DNA was also used to detect virus integration junctions within the c-myc or c-erbB loci by using a nested PCR (Gong et al., 1998
). PCR was carried out with primers L1/L2 derived from the U5 LTR and M1/M2 from exon 2 of c-myc or E1/E2 from c-erbB exon 15 as described previously (Chesters et al., 2001
). Nucleotide sequences of the PCR products were obtained directly or after cloning into the pGEM-T vector (Promega).
| RESULTS |
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E was constructed as described in Fig. 2
E construct was confirmed by sequence analysis. DNA from the HPRS-103 and HPRS-103
E clones was transfected into CEFs to produce the virus stocks. HPRS-103
E virus obtained from the culture supernatants of transfected CEFs gave titres (105 TCIU ml1) similar to those of HPRS-103 virus, indicating that deletion of the E element did not have a major effect on in vitro replication.
Birds from lines 0 and 15I infected as 1-day-old chicks with either of the viruses did not show any gross or histological lesions. However, evidence of virus replication was apparent in these birds from examination of serum samples 7 weeks after infection. These tests detected neutralizing antibodies in 5/32 (15.6 %) HPRS-103-infected and 12/32 (37.5 %) HPRS-103
E-infected line 0 birds. In comparison, none of the line 15I birds infected with HPRS-103 (0/29) or HPRS-103
E (0/29) developed neutralizing antibodies during this time (Table 2
). The infection status of birds infected as embryos was determined from the results of a p27 ELISA on cloacal swabs collected 16 days after hatching. There was no significant difference in the numbers of p27 ELISA-positive birds in line 0 (29/30) and line 15I (36/36) infected with HPRS-103. However, for HPRS-103
E infection, 30/30 line 0 birds were positive by p27 ELISA (Table 2
), whilst only approximately half (15/27) of the line 15I birds were positive (P
0.05).
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1.0). In comparison, the levels of oncogenicity were marginally lower (23.3 %) in line 0 birds infected with HPRS-103
E virus (P
1.0). Significantly, however, none (0/27) of the line 15I birds (P
0.01) infected as embryos with HPRS-103
E virus developed tumours during the course of the experiment. Histologically, the tumours were diagnosed as either EB with immature intravascular blast cells or ML with well-differentiated myeloid cells (Fig. 3
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E virus was tested initially by using the diagnostic F3/R3 PCR to identify proviruses with an intact or deleted E region (Fig. 4
E (Fig. 4
E-infected birds and four of the eight tumours derived from HPRS-103-infected birds showed evidence of integration within the c-myc locus (Fig. 5
E-infected (no. 390) and an HPRS-103-infected (no. 1999) bird also showed evidence of integration in both the c-myc and c-erbB loci (Fig. 5
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| DISCUSSION |
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E in two lines of birds.
Deletion of the E element did not affect in vitro replication, as the titres of virus stocks generated by transfection of the provirus clones were identical. Deletion of the E element also did not appear to affect virus replication in line 0 birds, as demonstrated by the similar proportion of infected birds detected either by cloacal swab ELISA or by neutralizing-antibody response at 7 weeks of age (Table 2
). However, in line 15I, only 55.6 % of the birds infected with HPRS-103
E virus showed evidence of infection by cloacal swab ELISA (compared with 100 % of birds infected with the HPRS-103 virus), demonstrating that deletion of the E element interferes with virus replication in this line. As the line 15I birds are immunologically tolerant to ALV-J infection (Sacco et al., 2004
), the failure to detect neutralizing antibodies in these birds 7 weeks after infection with either virus was not unexpected.
In addition to reduced in vivo replication of HPRS-103
E virus in line 15I, there was also reduced oncogenicity. Whilst infection with HPRS-103 did not show any significant difference in the incidence of tumours between line 0 and line 15I (33.3 %), this was not the case for HPRS-103
E virus (Table 2
). In line 0 birds, the incidence of tumours induced by HPRS-103
E virus (23.3 %) was slightly lower than that induced by HPRS-103. The oncogenic spectrum of the two viruses was very similar and consisted predominantly of EB or ML (Fig. 3
). As we have shown previously (Chesters et al., 2001
), the DNA samples extracted from these tumours showed viral integration in the c-erbB and c-myc loci (Table 3
and Fig. 5
), suggesting that these tumours are induced by insertional activation of these oncogenes.
In line 15I birds, deletion of the E element had a dramatic negative effect on oncogenicity, as none of the birds infected with HPRS-103
E virus developed tumours during the experimental period. This was not due to any specific resistance of line 15I, as the parental HPRS-103 virus induced tumours in 33.3 % of the infected birds. Thus, the loss of oncogenicity in line 15I could be attributed directly to deletion of the E element. Inbred line 15I is known for its increased susceptibility to lymphoid leukosis, Marek's disease (Bacon et al., 2000
) and ALV-J tumours (Payne et al., 1991b
). However, the study presented here shows that this susceptibility to ALV-J tumours is dependent specifically on the presence of an intact E element. This would also perhaps explain the absence of oncogenicity in line 15I birds that we observed in an earlier study, where we used a chimeric RCAS-J construct lacking the E element for infection (Chesters et al., 2002
). Despite these observations, the unique role of the E element in the oncogenicity of ALV-J in line 15I remains unclear. One of the well-known differences between lines 0 and 15I is the absence of any of the ev loci in the former. Also, we have recently identified an intact EAV-HP element with over 99 % sequence identity to HPRS-103 env in the line 15I genome (Sacco et al., 2004
). Based on its expression and distinct high similarity to the HPRS-103 envelope, it was suggested that this novel locus may have contributed to the emergence of ALV-J by recombination (Venugopal, 1999
). Further studies are needed to examine any possible relationships in the distribution of endogenous retroviruses, the HPRS-103 E element and differences in oncogenicity between these lines. The molecular basis for modulation of oncogenicity by the E element remains to be identified. Some indication of the E element function is given by the predicted secondary hairpin stemloop structure (Fig. 1
), which provides a potential nucleation site for RNA folding and multiple interactions with some of the host factors. In RSV, the XSR has been suggested to have an enhancer function (Laimins et al., 1984
). If these functions are attributable to the HPRS-103 E element, our study shows that it is only essential and unique in certain lines, and further studies are needed to unravel the molecular mechanisms and differences between chicken lines.
| ACKNOWLEDGEMENTS |
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Received 30 January 2006;
accepted 29 April 2006.
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