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1 The United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan
2 The 21st Century Center of Excellence Program, Iwate University, Morioka 020-8550, Japan
3 Plant Pathology Laboratory, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan
4 Kyoto Prefectural Institute of Agricultural Biotechnology, Soraku-gun, Kyoto 619-0244, Japan
5 Graduate School of Life and Environmental Sciences, University of Osaka Prefecture, Sakai 599-8531, Japan
Correspondence
Nobu Yoshikawa
Yoshikawa{at}iwate-u.ac.jp
| ABSTRACT |
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| INTRODUCTION |
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In plants, RNA silencing functions as an immune system against viruses and transposons (Vance & Vaucheret, 2001
; Baulcombe, 2004
; Ding et al., 2004
; Voinnet, 2005a
; Wang & Metzlaff, 2005
). During virus infection, long double-stranded (ds) RNAs generated from the replication intermediates of virus RNA trigger RNA silencing. When RNA silencing is induced at one site, silencing signals then move both from cell to cell and long distance (Palauqui et al., 1997
; Voinnet & Baulcombe, 1997
; Guo & Ding, 2002
; Himber et al., 2003
) and trigger systemic silencing of target RNA in distant tissues of plants. If the silencing signals induced by virus replication spread in advance of virus movement, sequence-specific virus resistance may be established in whole plants and the virus cannot infect systemically. Although the exact nature of silencing signals remains to be elucidated, RNA is probably a key component to confer sequence specificity in RNA silencing (Mlotshwa et al., 2002
; Voinnet, 2005b
).
To counteract RNA silencing, viruses have evolved RNA-silencing suppressors. Over 30 viral suppressors have been identified among plant, animal and insect viruses. However, these suppressors have no obvious sequence similarity to each other and they interfere with the RNA-silencing pathway at different points (Roth et al., 2004
; Voinnet, 2005a
). For instance, the helper componentproteinase (HC-Pro) of potyviruses suppresses intracellular local silencing by interfering with the upstream production of siRNA, and it also affects the biogenesis and function of microRNA (Chapman et al., 2004
; Dunoyer et al., 2004
). On the other hand, the 2b protein encoded by Cucumber mosaic virus (CMV) and the P25 protein of Potato virus X (PVX) prevent the spread of RNA-silencing signals by inhibiting their movement and/or production (Brigneti et al., 1998
; Voinnet et al., 2000
; Guo & Ding, 2002
). The P21 protein of Beet yellows virus and P19 protein of tombusviruses bind to and presumably inactivate siRNA (Chapman et al., 2004
; Lakatos et al., 2004
). Interestingly, Citrus tristeza virus (CTV) encodes three distinct suppressors that interfere with multiple steps of RNA silencing (Lu et al., 2004
). Identification and analysis of viral silencing suppressors are important both for understanding the survival strategy of viruses in host plants and for dissecting the RNA-silencing pathway.
Apple chlorotic leaf spot virus (ACLSV) is the type species of the genus Trichovirus. It has flexuous, filamentous particles of approximately 600700 nm in length, which contain a polyadenylated, single-stranded, plus-sense RNA and multiple copies of a single coat protein (CP) of 21 kDa (Yoshikawa & Takahashi, 1988
). ACLSV is distributed worldwide and is known to infect Rosaceae fruit-tree species, including apple, peach, pear, plum, cherry and apricot (Lister, 1970
; Martelli et al., 1994
). In Japan, ACLSV is one of the causative agents of apple topworking disease and induces lethal decline in apple trees grown on Maruba kaido (Malus prunifolia Ringo) rootstocks (Yanase, 1974
). Complete nucleotide sequences have been reported for the P863 and PBM isolates from plum, for BAL1 from cherry and for P-205 from apple (German et al., 1990
; German-Retana et al., 1997
; Sato et al., 1993
). The genome of an apple isolate of ACLSV (P-205) consists of 7552 nt excluding the 3' poly(A) tail and contains three open reading frames (ORFs 1, 2 and 3) that encode a 216 kDa protein (P216) involved in replication, a 50 kDa movement protein (P50) and CP, respectively (Sato et al., 1993
). Both P50 and CP are expressed from 3'-coterminal subgenomic RNA. At present, it has not been elucidated which of these proteins might act as a suppressor of RNA silencing.
In this study, we have used an Agrobacterium-mediated transient assay in the green fluorescent protein (GFP)-expressing Nicotiana benthamiana line 16c to show that ACLSV P50 is an unusual suppressor of RNA silencing that interferes with the spread of systemic silencing induced by both single-stranded (ss) RNA and dsRNA, but not with local silencing in infiltrated leaves. The suppression of systemic silencing by P50 is probably due to inhibition of the movement of silencing signals into upper leaves, not suppression of the production of signals.
| METHODS |
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) and nos terminator, was also used. The plasmid pBE2113-P35T was constructed from pBE2113-EGFP (Yoshikawa et al., 1999
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Agroinfiltration and GFP imaging.
A. tumefaciens carrying each construct was cultured on LuriaBertani (LB) agar containing kanamycin, rifampicin and tetracycline at 28 °C for 48 h. Bacterial cells were harvested and resuspended in an infiltration buffer [10 mM MES (pH 5.6), 10 mM MgCl2 and 150 µM acetosyringone] to a final OD600 of 1.0 for general infiltration and incubated for 24 h at room temperature. In co-infiltration, equal volumes of each suspension were mixed prior to infiltration. Five-week-old GFP-expressing transgenic N. benthamiana line 16c plants (kindly provided by Professor David Baulcombe, Sainsbury Laboratory, Norwich, UK) and non-transgenic Nicotiana occidentalis 37B plants were infiltrated on the fourth, fifth and sixth true leaves with a 1 ml syringe without a needle. The infiltrated plants were kept at 25 °C in a growth chamber. GFP fluorescence was observed under long-wavelength UV light (Black Ray model B 100A; UV Products) and photographed by using a FinePix S1 Pro digital camera (Fujifilm) with a yellow filter.
Western blot analysis.
Total proteins extracted from co-infiltrated N. benthamiana line 16c leaf tissues were electrophoresed in an SDS/polyacrylamide (12.5 %) gel and transferred electrophoretically to a PVDF membrane (Millipore). The membrane was incubated with polyclonal antibodies against P50 or ACLSV particles, followed by anti-rabbit IgG (H&L) alkaline phosphatase-linked antibody (Cell Signaling Technology), and then immersed in development solution containing Fast Red TR salt (Sigma) and naphthol AS-MX phosphate (Sigma).
RNA analysis.
Total RNAs were extracted from 200300 mg leaf tissue by using TRI reagent (Sigma) according to the manufacturer's protocol. For Northern blot analysis of GFP mRNA, the same amount of total RNA was separated on a 1 % agarose gel containing 6 % formaldehyde and transferred to Hybond-N+ membrane (Amersham Biosciences). For analysis of siRNAs, low-molecular-weight RNAs (LMW-RNAs) were enriched from total RNAs by removing high-molecular-mass RNAs using 10 % polyethylene glycol (PEG8000) and 1 M NaCl. The LMW-RNA (4 µg) in each sample was separated on a 7 M urea/15 % polyacrylamide gel and then transferred to Hybond-N+ membrane. After UV cross-linking, the membranes were hybridized with digoxigenin (DIG)-labelled antisense RNA probes complementary to the full-length GFP sequence. The hybridized membranes were immunodetected with anti-DIG Fab fragments coupled to alkaline phosphatase (Roche) and visualized with a chemiluminescent substrate (CSPD; Amersham Biosciences) on X-ray films.
| RESULTS |
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When leaves of N. benthamiana line 16c were infiltrated with a mixture of agrobacteria carrying pBI-GFP and pBE2113-P35T, GFP fluorescence derived from pBI-GFP reached the highest level in infiltrated regions 23 days post-infiltration (p.i.), followed by decrease or disappearance of fluorescence at 45 days p.i. [Fig. 2a(i)
]. In contrast, leaves infiltrated with pBI-GFP plus pBE2113-HCPro showed a marked increase in GFP fluorescence at 23 days p.i. and the fluorescence remained at a high level for at least 2 weeks [Fig. 2a(ii)
], indicating that ClYVV HC-Pro has strong suppressor activity, as described previously for other potyviruses (Anandalakshmi et al., 1998
; Brigneti et al., 1998
; Kasschau & Carrington, 1998
). When a mixture of agrobacteria carrying pBI-GFP and pBE2113-P216, pBE2113-P50 or pBE2113-CP was infiltrated, none of P216, P50 or CP showed any effects on the intensity of GFP fluorescence, and the fluorescence in infiltrated regions disappeared at 5 days p.i. [Fig. 2a(iiiv)
].
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As the presence of siRNA is a hallmark of RNA silencing (Hamilton & Baulcombe, 1999
; Hamilton et al., 2002
), the accumulation of siRNA specific for GFP mRNA was analysed. Fig. 2(b)
showed that the accumulation of siRNAs of 2125 nt length was detected readily in leaves infiltrated with GFP plus empty vector or vector expressing P216, P50 or CP, but not in samples infiltrated with buffer only (mock) or GFP plus vector expressing HC-Pro. From these results, it is concluded that none of the three known proteins of ACLSV, P216, P50 or CP, has a suppressor activity that interferes with local silencing in N. benthamiana line 16c.
To demonstrate that P50 and CP accumulate in infiltrated leaves, leaves infiltrated with GFP plus vector expressing P50 or CP were collected at 3 and 5 days p.i. and Western blot analysis using polyclonal antibodies against P50 (anti-P50) and ACLSV particles (anti-CP) was carried out. As shown in Fig. 2(c)
, both P50 and CP were expressed and detected readily at 3 days p.i., but the accumulation level of both proteins had decreased at 5 days p.i. (Fig. 2c
). These results support the hypothesis that neither P50 nor CP could suppress local silencing. However, we cannot strictly rule out the possibility that the failure of P216 to suppress local silencing could be due to instability of the protein.
|
P50 interferes with systemic silencing in N. benthamiana
After the onset of RNA silencing, a mobile silencing signal is thought to spread systemically and induce systemic silencing of homologous sequences in upper leaves (Guo & Ding, 2002
; Mlotshwa et al., 2002
; Palauqui et al., 1997
; Voinnet, 2005b
; Voinnet & Baulcombe, 1997
). To investigate whether P216, P50 or CP can interfere with the induction of systemic silencing, GFP fluorescence was monitored in upper leaves of N. benthamiana infiltrated with a mixture of agrobacteria carrying pBI-GFP plus pBE2113-P216, pBE2113-P50 or pBE2113-CP as described above. In this analysis, pBE2113-2b, which expresses 2b protein of CMV-pepo (Saiga et al., 1998
; Kobori et al., 2003
; Ryang et al., 2004
), was used as a positive control for a protein with systemic silencing-suppressor activity (Brigneti et al., 1998
; Guo & Ding, 2002
).
When 16c plants were infiltrated with GFP plus empty vector, fluorescence in upper uninfiltrated leaves started to fade out at 8 days p.i. and disappeared extensively after 14 days p.i. [Fig. 3a(ii)
]. The disappearance of GFP fluorescence in upper leaves was found on 96.7 % of plants (29 of 30 infiltrated plants) (Table 1
). In contrast, upper leaves of all plants infiltrated with GFP plus CMV 2b showed green fluorescence similar to that in mock-infiltrated plants at 14 days p.i. [Fig. 3a(i, iii)
; Table 1
], indicating that CMV 2b functioned as a suppressor of systemic silencing as reported before (Brigneti et al., 1998
; Guo & Ding, 2002
). When 16c plants were infiltrated with GFP plus P50, upper leaves of 73.3 % (22 of 30) plants remained brightly green fluorescent at 14 days p.i. [Fig. 3a(iv-a)
], whilst the remaining plants exhibited partial disappearance of GFP fluorescence mainly on and around the veins of a few leaves [Fig. 3a
(iv-b)]. Thus, P50 appears to be almost as efficient as CMV 2b in suppression of systemic silencing. On most of the plants infiltrated with GFP plus a vector expressing P216, CP or FSP50 (a frame-shift mutant of P50), GFP fluorescence in all upper leaves had mostly disappeared at 14 days p.i. [Fig. 3a
(v); Table 1
].
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We next investigated the suppressor activity of P50 when systemic silencing was induced in plants by infiltration with dsRNA. The 16c plants were infiltrated with GFP plus dsGFP (pBI-dsGFP) plus empty vector or vector expressing CMV 2b or P50, and the resulting systemic silencing in upper leaves was monitored. Most plants infiltrated with GFP plus dsGFP plus CMV 2b (13 of 15 plants) and GFP plus dsGFP plus empty vector (14 of 15 plants) developed systemic silencing in upper uninfiltrated leaves (Table 1
). On the other hand, 60 % of plants (nine of 15 plants) infiltrated with GFP plus dsGFP plus vector expressing P50 did not show systemic silencing in upper leaves (Table 1
), indicating that P50 interferes with systemic silencing induced by both ssRNA and dsRNA. Our finding that CMV 2b suppresses systemic silencing triggered by ssRNA, but not by dsRNA, is consistent with the result reported for 2b of Tomato aspermy virus (Cao et al., 2005
).
It has been reported that short (2122 nt) and long (25 nt) siRNAs may be involved in cell-to-cell and long-distance movement of silencing signals, respectively (Hamilton et al., 2002
; Himber et al., 2003
). We analysed the accumulation level of these two classes of siRNA in leaves infiltrated with GFP plus empty vector or vector expressing CMV 2b or P50. Fig. 3(c)
shows that both short (2122 nt) and long (2526 nt) siRNAs from GFP mRNA accumulated to a similar level in the P50- and empty vector-infiltrated leaves. From these results, it appears that P50 does not inhibit the production of long siRNA, a candidate component of the signal for systemic silencing. In CMV 2b-infiltrated leaves, on the other hand, local silencing in infiltrated regions was suppressed and only a trace of siRNA was detected by Northern blot hybridization (Fig. 3c
).
P50 interferes with the movement of silencing signals
To test whether P50 suppress systemic silencing by inhibiting the movement of silencing signals, we conducted an assay described by Guo & Ding (2002)
, in which CMV 2b was expressed locally along the presumed path of movement of silencing signals. The agrobacteria carrying pBI-GFP and pBE2113-P50 were infiltrated simultaneously but separately into tip (T) or base (B) portion of two basal leaves of N. benthamiana line 16c and systemic silencing of GFP in upper leaves was monitored. In this assay, empty vector and vector expressing CMV 2b were used as a negative and a positive control for a protein with systemic silencing-suppressor activity, respectively (Guo & Ding, 2002
).
The results are summarized in Table 2
. Most of the 16c plants infiltrated with GFP (T) and empty vector (B) (14 of 15 infiltrated plants) showed systemic silencing of GFP in upper leaves at 14 days p.i. In contrast, 73.3 % of 16c plants (11 of 15 plants) infiltrated with GFP (T) and CMV 2b (B) showed green fluorescence similar to that in mock-infiltrated plants at 14 days p.i., in agreement with the results for CMV 2b reported previously (Guo & Ding, 2002
). When 16c plants were infiltrated with GFP (T) and P50 (B), uninfiltrated upper leaves of 50 % of infiltrated plants (10 of 20 plants) did not show systemic silencing of GFP at 14 days p.i. Because P50 could spread into neighbouring cells from cells that produce it (Satoh et al., 2000
), 16c plants were infiltrated with both constructs in the opposite orientation to exclude the possibility that P50 moves into silenced cells and prevents the production of silencing signals in it. All 16c plants infiltrated with GFP (B) and P50 (T) exhibited systemic silencing of GFP in upper leaves. These results suggest that P50 suppressed systemic silencing by inhibiting the movement of silencing signals.
|
| DISCUSSION |
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The suppressor activity of P50 is relatively unusual among suppressors encoded by plant viruses reported so far, in that P50 suppresses systemic silencing in upper leaves without interfering with local silencing in infiltrated leaves. Similar behaviour for suppressors encoded by plant viruses have been reported for P1 protein of Rice yellow mottle virus (RYMV) and a coat protein (CP) of Citrus tristeza virus (CTV) (Himber et al., 2003
; Lu et al., 2004
). Of the two, P50 appears to be closer to CTV CP than to RYMV P1, because RYMV P1 reduces accumulation specifically of the long species of siRNA (Hamilton et al., 2002
; Himber et al., 2003
). On the other hand, neither P50 (Fig. 3c
) nor CTV CP (Lu et al., 2004
) affected the accumulation of long or short siRNAs. Both ACLSV and CTV are fruit-tree viruses and a suppressor activity that only suppresses systemic silencing might be favourable for persistent infection in fruit trees.
The suppression of systemic silencing by P50 was not complete and the percentages of silenced plants out of infiltrated plants were 73.3 and 60 % in systemic silencing induced by ssRNA and dsRNA, respectively (Table 1
). This incomplete suppression might be due to the lack of suppressor activity for local silencing in P50, because transient expression of a candidate protein in the agroinfiltration assay ceases at 23 days p.i. unless it can suppress local silencing (Voinnet et al., 2003
). In fact, P50 in agroinfiltrated regions was detected readily by Western blot analysis at 3 days p.i., but was difficult to detect at 5 days p.i. (Fig. 2c
, left).
In this study, we found that CMV 2b protein could suppress both local and systemic silencing induced by ssRNA (pBI-GFP), but it did not prevent systemic silencing by dsRNA (pBI-dsGFP). The result is similar to findings with 2b of Tomato aspermy virus (Cao et al., 2005
). On the other hand, P50 suppressed systemic silencing induced by both ssRNA and dsRNA without affecting the accumulation of either short (2122 nt) or long (25 nt) siRNA (Table 1
; Fig. 3c
). This suggests that the step in the silencing pathways at which P50 works is different from that of CMV 2b. Moreover, the result from concurrent infiltration at the tip and the base of a leaf suggested strongly that P50 suppressed systemic silencing by inhibiting the movement of silencing signals (Table 2
). Although the nature of the systemic silencing signals remains to be determined, the signals move from cell to cell through plasmodesmata and systemically through phloem (Palauqui et al., 1997
; Voinnet et al., 1998
). P50 could spread from cells that initially produce it into neighbouring cells (Satoh et al., 2000
) and accumulate in sieve elements in P50-plant (P50-expressing transgenic N. occidentalis) and ACLSV-infected plant leaves (Yoshikawa et al., 1999
, 2006
). At these sites, P50 might be positioned to prevent the movement of silencing signals rather than blocking the production of the signals in cells. Alternatively, P50 would interfere with host protein(s) required for movement of the silencing signals. Screening for plant factor(s) interacting with P50 might help to elucidate the nature of the silencing signals.
Because silencing signals move from cell to cell through plasmodesmata and systemically through phloem (Palauqui et al., 1997
; Voinnet et al., 1998
) in a manner similar to that of virus movement, localization of P50 in plasmodesmata and its accumulation on the parietal layer of sieve elements and on sieve plates (Yoshikawa et al., 1999
, 2006
) may correlate with the ability of P50 to prevent systemic silencing.
| ACKNOWLEDGEMENTS |
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Received 12 July 2006;
accepted 22 September 2006.
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