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J Gen Virol 88 (2007), 2656-2661; DOI 10.1099/vir.0.83058-0

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Short Communication

Post-translational modifications of Epstein–Barr virus BARF1 oncogene-encoded polypeptide

Mireille de Turenne-Tessier and Tadamasa Ooka

Virologie et Pathologie Humaine, CNRS FRE3011, Université Lyon 1, Faculté de Médecine RTH Laennec, rue G. Paradin, F-69372 Lyon, France

Correspondence
Mireille de Turenne-Tessier
tessier{at}sante.univ-lyon1.fr


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Epstein–Barr virus is associated with several human lymphomas and carcinomas, and its BARF1 oncogene encodes a protein that is thought to play an important role in carcinogenesis. A BARF1 recombinant adenovirus expression system, which led us to discover the macromolecular size of the cleaved and secreted form of the BARF1 protein in the native state and its mitogenic capacity on various cell lines in culture, was used further to investigate the structure and maturation of the BARF1 protein. We recently reported biophysical studies that showed dimer-based oligomerization of the BARF1 polypeptide. Here, new data are presented that confirm post-translational modifications predicted from the BARF1 sequence: phosphorylation on serine and threonine, and N- and O-glycosylation. The N- and O-glycans were partially characterized and it was demonstrated that both modifications are required for active secretion of the BARF1 protein via the classical pathway.


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Epstein–Barr virus (EBV), the ubiquitous human gammaherpesvirus responsible for infectious mononucleosis, is also associated with lymphocytic or epithelial cancers (Young & Rickinson, 2004Down). Although latent membrane protein 1 is essential for B-cell immortalization, the BARF1 gene is thought to play an important role in carcinoma development. Indeed, its expression was found in >90 % of EBV-positive gastric or nasopharyngeal carcinoma biopsies (Decaussin et al., 2000Down; zur Hausen et al., 2000Down; Luo et al., 2005Down; Seto et al., 2005Down) and its anti-apoptotic role was recently demonstrated in gastric cancer cells (Wang et al., 2006bDown). Our transfection experiments (de Turenne-Tessier et al., 2005Down; Ooka, 2005Down) demonstrated the ability of BARF1 to induce cell immortalization or malignant transformation and to activate several cellular genes, including Bcl-2. On the other hand, our observations and those of others (Tanner et al., 1997Down; Strockbine et al., 1998Down; Cohen & Lekstrom, 1999Down) revealed several immunomodulatory functions of the BARF1 protein.

Previous studies of the BARF1 sequence predicted a 24.5 kDa hydrophobic polypeptide with a 20 aa signal peptide, three sites for phosphorylation and one site for N-glycosylation (de Turenne-Tessier et al., 1997Down). However, we detected the BARF1 protein as a 31–33 kDa intracellular polypeptide in various cell types and, later, the secretion of a 29 kDa polypeptide was reported (Strockbine et al., 1998Down) and confirmed in our laboratory from distinct BARF1-expressing cells in the growth phase (Sall et al., 2004Down). BARF1 expression in human epithelial cells infected with a tetracyclin-regulatable recombinant adenovirus (rAd/B-G) allowed us to identify the signal peptide cleavage site by amino-terminal sequencing, and to discover that the BARF1 protein is secreted naturally as a macromolecule endowed with mitogenic activity in various cell cultures (Sall et al., 2004Down; de Turenne-Tessier et al., 2005Down). Here, our expression system was used further to investigate the post-translational modifications of the BARF1-encoded polypeptide and the native molecular structure of its secreted form. The data presented here on the phosphorylation and glycosylation of the BARF1 protein complement both our biophysical analyses revealing the hexameric structure of the secreted BARF1 protein (Tarbouriech et al., 2006Down) and the studies on BARF1 protein maturation reported by Wang et al. (2006a)Down.

Phosphorylation of the BARF1 protein was examined in both its secreted and membrane forms, as BARF1 protein was found in both the insoluble and aqueous-phase fractions obtained by Triton X-114 extraction and partitioning of the crude cell-membrane components from rAd/B-G-infected 293-tTA cells (de Turenne-Tessier et al., 2005Down). BARF1 protein samples were prepared and submitted to two-dimensional (2D) electrophoresis and Western blotting as described previously (de Turenne-Tessier et al., 2005Down), except that blots were treated in TBS-Tw (20 mM Tris, pH 7.6; 137 mM NaCl; 0.1 % Tween 20) and saturated with 1 % BSA. By using the classical stripping/reprobing procedure (Amersham Biosciences), the BARF1 protein was detected with Ra-Barf1 polyclonal antibodies (de Turenne-Tessier et al., 2005Down) and its phosphorylation was examined with anti-phosphothreonine and anti-phosphoserine monoclonal antibodies (Sigma). Although no phosphorylation could be detected on BARF1-associated spots from the Triton X-114-insoluble membrane fraction, spots identified as BARF1-encoded polypeptide either in the aqueous phase of Triton X-114-soluble membrane extract or in the conditioned culture medium were recognized clearly by both anti-phosphoserine and anti-phosphothreonine antibodies (Fig. 1Down). As protein phosphorylation occurs in the endoplasmic reticulum (ER) and BARF1 protein follows the classical secretory pathway (see below), these results supported our previous suggestion (de Turenne-Tessier et al., 2005Down) that the Triton X-114-insoluble membrane fraction retained uncleaved immature BARF1 polypeptide, whereas the soluble fraction contained cleaved BARF1 protein being processed through the intracellular cisternae to the plasma membrane, without excluding the possible presence of secreted BARF1 protein acting as an autocrine growth factor. As the presence of several isoforms in BARF1 protein 2D electrophoresis patterns seemed to be only partially connected with serine/threonine phosphorylation (Fig. 1Down) or glycosylation (results not shown), these isoforms might also reflect unidentified post-translational modification, partial denaturation of oligomers/aggregates during isoelectric focusing and/or recombinant protein heterogeneity. Our higher detection of phosphothreonine than phosphoserine might reflect differences in phosphorylation levels and/or in antibody affinities. NetPhos (Blom et al., 1999Down) and Proscan (Combet et al., 2000Down) predictions differ, and analyses using site-specific antibodies, directed mutagenesis and/or mass spectrometry should clarify the sites and functions of the BARF1 protein multi-site phosphorylation (Salazar & Höfer, 2007Down).


Figure 1
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Fig. 1. 2D electrophoresis and Western blot analysis of BARF1 protein phosphorylation in rAd/B-G-infected 293-tTA cells. The phosphorylation patterns shown were obtained from the aqueous phase of the Triton X-114-soluble membrane fraction (left) and from secreted BARF1 protein (right). Blots were incubated overnight at 4 °C with Ra-Barf1 rabbit serum (1 : 1000–1 : 2500), or with anti-phosphothreonine (anti-PT, 1 : 1000) or anti-phosphoserine (anti-PS, 1 : 500–1 : 1000) monoclonal antibodies. To avoid interference between successive tests, stripping efficiency was controlled before reprobing PVDF blots, and conjugates to either peroxidase or alkaline phosphatase were used alternately to combine enhanced chemiluminescence and BCIP/NBT staining (marked with asterisks) responses.

 
BARF1 protein glycosylation was first investigated in vitro by testing the sensitivity of its secreted form to different glycosidases. Samples of culture medium of BARF1-expressing 293-tTA or HeLa-rtTA cells were either left untreated or partially denatured for 5 min at 95 °C in the presence of 0.1–0.2 % SDS before being incubated overnight at 37 °C in conditions adjusted for optimal activity of each enzyme (Roche).

N-Glycosylation was first analysed by using either peptide N-glycosidase F (NGF) or endoglycosidase H (endoH), known to remove all and only immature (non-complex) types of N-linked glycan, respectively (Maley et al., 1989Down). As shown in Fig. 2(a)Down, no digestion by either glycosidase was obtained from the native form of the secreted BARF1 protein, but partial denaturation rendered the protein sensitive to either NGF or endoH; the major 29 kDa polypeptide (p29) was degraded into a 25 kDa product (p25), and the 27 kDa polypeptide (p27, detected in 293-tTA but not HeLa-rtTA cell medium) into a 23 kDa product (p23). Although some digestion by endoH was observed on the BARF1 protein treated with 15 mM dithiothreitol (DTT), heating with 0.2 % SDS was necessary and sufficient for complete N-glycan deletion. The predicted N-glycosylation of the BARF1 protein was thus confirmed and was shown to consist of mannose-rich carbohydrate side chains buried within the native molecular structure of the secreted protein. The N-glycans were examined further by testing BARF1 protein affinity for agarose-conjugated concanavalin A (conA-ag, from Canavalia ensiformis; Sigma). Overnight incubation of HeLa-rtTA cell-culture medium with conA-ag in conA buffer (0.1 M potassium phosphate buffer, pH 6, containing 1 M NaCl and 1 mM each of MgCl2, CaCl2 and MnCl2) at room temperature was followed by conA-ag washing with conA buffer and elution of the conA-bound proteins by competition with methyl-{alpha}-D-glucopyranoside (MGP, 0.5–1.0 M; Sigma). As shown in Fig. 2(a)Down, mannose-rich N-glycosylation was confirmed by the great affinity of the secreted BARF1 protein for conA, which led us to develop a simple and efficient purification procedure. Indeed, the direct fractionation of the culture medium of 750x106 HeLa-rtTA cells with conA-ag (in the ratio of 1 µl conA-ag suspension to 1–3 µg BARF1 protein in a 20 µl final volume) resulted in the recovery of about 1 mg highly enriched protein, allowing successful biophysical analyses of the secreted BARF1 protein structure (Tarbouriech et al., 2006Down).


Figure 2
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Fig. 2. Secreted BARF1 protein N-glycosylation. (a) Sensitivity to endoglycosidases. BARF1 protein secreted by 293-tTA or HeLa-rtTa cells was submitted to digestion with either NGF (154 U ml–1) or endoH (0.17 U ml–1). NGF activity was examined on protein samples that were either native (N) or partially denatured by heating with 0.1 % SDS (pD). EndoH activity was tested on BARF1 protein that was submitted or not to thermal denaturation in the presence or absence of 0.2 % SDS and/or 15 mM DTT. (b) Affinity for conA-ag. Conditioned culture medium from HeLa-rtTA cells ATc-induced or not to express BARF1 was treated with conA-ag. The non-retained (nr) and MGP-eluted (el) protein fractions were compared by Western blotting with Ra-Barf1 serum. The purity and quantity of BARF1 protein secreted by 2x106 cells were estimated by Coomassie blue gel staining with reference to carbonic anhydrase (CA).

 
As O-linked oligosaccharides are found frequently on N-glycosylated proteins (Spiro, 2002Down) and the NetOglyc 3.1 program (Julenius et al., 2005Down) predicted a mucin-type O-glycosylation at threonine 169 of the BARF1 sequence, we wondered whether p29 and p25 might differ from p27 and p23, respectively, due to O-GalNAc glycosylation (Van den Steen et al., 1998Down). When secreted BARF1 protein was treated with O-glycosidase (endo-{alpha}-N-acetylgalactosaminidase from Streptococcus pneumoniae, 0.02–0.10 U ml–1), which releases the Gal(beta1–3)GalNAc disaccharide bound to serine or threonine as a core unit of mucin-type O-glycans, no digestion was observed for either native or partially denatured samples. On the other hand, neuraminidase from Vibrio cholerae, which releases terminal sialic acid from various glycans, reduced p29 and p25 into p27 and p23, respectively, whether the BARF1 protein had been partially denatured or not (Fig. 3aDown). No further downward shift was detectable when O-glycosidase was added with or after neuraminidase. Such data suggested a mucin-type O-glycosylation during which sialic acid substitution of the disaccharide Gal(beta1–3)GalNAc would be responsible for the resistance to O-glycosidase. With reference to recently reported data (Nagano et al., 2005Down), O-glycosylation was investigated further by testing the affinity of blotted BARF1 protein for peanut agglutinin (PNA, from Arachis hypogaea; Sigma), a lectin that recognizes the disaccharide Gal(beta1–3)GalNAc in the absence of sialic acid residues. SDS-PAGE and protein transfer were performed on native or neuraminidase-digested samples of both pure fetuin from fetal calf serum (Sigma), used as a control (Carpentier et al., 2005Down), and a conA-purified fraction from HeLa-rtTA-secreted BARF1 protein. After saturation with BSA, the blot was incubated overnight at 4 °C with 20 µg biotin-labelled PNA ml–1 in TBS-Tw containing 1 mM each of MgCl2, CaCl2 and MnCl2, then washed and treated with peroxidase-conjugated streptavidin for chemiluminescence analysis of lectin binding. As shown in Fig. 3(b)Down, only the desialylated forms of BARF1 protein and fetuin were able to bind PNA efficiently, which indicated BARF1 protein modification by Gal(beta1–3)GalNAc, with a sialic acid ({alpha}2–3) substitution preventing PNA recognition.


Figure 3
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Fig. 3. Secreted BARF1 protein O-glycosylation. (a) N-Glycosylation-independent sialylation. Native or partially denatured samples of HeLa-rtTA-secreted BARF1 protein were treated or not with endoH and incubated or not with neuraminidase (0.10 U ml–1) before Western blotting with Ra-Barf1 serum. (b) PNA affinity. After SDS-PAGE and protein transfer of native or desialylated samples of fetuin and HeLa-rtTA-secreted BARF1 protein, blotted protein was treated with biotin-labelled PNA and lectin binding was analysed with peroxidase-conjugated streptavidin and chemiluminescence before BARF1 protein detection using alkaline phosphatase conjugate and BCIP/NBT staining.

 
Our in vitro biochemical analyses were completed with protein processing inhibition assays performed on cultured cells to examine the intracellular steps of BARF1 protein glycosylation in relation to secretion. Five hours after the initiation of BARF1 protein expression, HeLa-rtTA cells were treated for 15–23 h with chemicals (Sigma) that impede distinct protein-maturation steps: tunicamycin, which hinders co-translational N-glycosylation in the ER; benzyl 2-acetamido-2-deoxy-{alpha}-D-galactopyranoside (benzyl-{alpha}-GalNAc) and monensin, which respectively prevent mucin-type O-linked glycosylation directly and indirectly in the Golgi; and brefeldin A, which disassembles the Golgi complex and thus inhibits ER->Golgi->plasma membrane translocation (Mardassi et al., 1998Down; Tsuiji et al., 2003Down; Pager et al., 2004Down). As revealed by Western blot analysis of the crude cell extracts and conditioned culture media (results not shown), all of the agents tested suppressed or strongly restricted BARF1 protein secretion, leading to intracellular accumulation of distinct BARF1 products: matured forms in the presence of brefeldin A (5 µg ml–1), p23 only in the presence of tunicamycin (10 µg ml–1) and p27 only in the presence of benzyl-{alpha}-GalNAc (1.5–4.5 mM) or monensin (17 µg ml–1), with some p25 secretion being observed in the presence of tunicamycin, but not in the presence of both tunicamycin and monensin. Although Wang et al. (2006a)Down reported that N-glycosylation was essential for the maturation and ER->Golgi->plasma membrane translocation of BARF1 protein in BARF1-transfected HeLa cells, our observations demonstrated the involvement of both N- and O-glycosylation in the active secretion of BARF1 protein via the classical pathway. The weak secretion of incompletely glycosylated polypeptides was enigmatic, but has already been reported from another human recombinant adenovirus system (Mardassi et al., 1998Down) and from vaccinia virus-infected cells (Ng et al., 2001Down). As 293-tTA and HeLa-rtTA cells, both of human epithelial origin, but permissive and non-permissive, respectively, for rAd/B-G replication, did not secrete exactly the same panel of BARF1 protein isoforms (Fig. 2Up), BARF1 polypeptide processing seemed to be partially dependent on the cell type and/or adenovirus expression system used.

We have demonstrated here that the detection of 23–29 kDa products from actively growing cells was related to both N- and O-glycosylation of cleaved BARF1 polypeptide. As cell incubation with both tunicamycin and monensin limited BARF1 expression to a 23 kDa polypeptide co-migrating with the product of secreted BARF1 protein digestion with both endoH and neuraminidase, the absence of N- and O-linked glycans led to a polypeptide molecular size close to that predicted from the BARF1 amino acid sequence (22.3 kDa). Our data on N-glycosylation supplement both the mutation approach of Wang et al. (2006a)Down and our biophysical analyses (Tarbouriech et al., 2006Down) to confirm the existence of a single, high-mannose-type N-glycan linked to asparagine 95 and located on the inner side of the hexameric ring structure of the BARF1 protein. Small discrepancies between our evaluation and that of Wang et al. (2006a)Down of N-glycan and BARF1 isoforms produced by HeLa cells might result from the use of different expression vectors and/or electrophoresis conditions. As mannose-rich N-linked glycans are not typical of cytokines (Meads & Medveczky, 2004Down) or secreted viral proteins (Mardassi et al., 1998Down; Ressing et al., 2005Down; Wahl-Jensen et al., 2005Down; Evans et al., 2006Down), and as N-glycosylation did not appear essential for BARF1 protein oligomeric structure (unpublished data from our sedimentation-velocity analyses; not shown), it is suggested that immature N-glycosylation results from BARF1 polypeptide oligomerization in the ER, the concealed location of asparagine 95 hindering the access of oligosaccharides to the Golgi processing machinery (Rudd & Dwek, 1997Down; Cals et al., 1996Down). Mucin-type O-glycosylation with sialic acid substitution was indicated by the sensitivity of native secreted BARF1 protein to neuraminidase, its resistance to O-glycosidase and PNA affinity for desialylated BARF1 protein. O-Glycosylation was confirmed by the effects of cell treatment with monensin or benzyl-{alpha}-GalNAc, which induced the production of a 27 kDa polypeptide co-migrating with secreted BARF1 protein digested by neuraminidase. Although the existence of a superficial O-glycan linked to threonine 169 was consistent with our crystallographic data (Tarbouriech et al., 2006Down), the exact site of BARF1 protein O-glycosylation should be confirmed by directed mutagenesis.

Given the various possible roles of protein glycans (Mitra et al., 2006Down) and the requirement for both N- and O-linked glycosylation for BARF1 protein secretion, the carbohydrate side chains of the BARF1 polypeptide should be characterized fully, as secreted BARF1 protein mitogenic activity (Sall et al., 2004Down) and functional binding to human colony-stimulating factor 1 (Strockbine et al., 1998Down) both suggest that secretion might be an important pathway for BARF1 functions in oncogenicity and/or immunomodulation.


   ACKNOWLEDGEMENTS
 
This work was supported by grants from the Association pour la Recherche contre le Cancer (ARC), the Agence Nationale de la Recherche (ANR) and the Ligue Nationale Contre le Cancer (Comité de la Loire).


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Received 5 April 2007; accepted 31 May 2007.



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