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satellite substitutes for the DNA B of a bipartite begomovirus to permit systemic infection
1 CSIRO Plant Industry, PO Box 350, Glen Osmond, SA 5064, Australia
2 School of Agriculture, Food and Wine, University of Adelaide, Glen Osmond, SA 5064, Australia
3 National Institute for Biotechnology and Genetic Engineering, PO Box 577, Jhang Road, Faisalabad, Pakistan
Correspondence
Ali Rezaian
rezaian{at}bigpond.net.au
| ABSTRACT |
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is a circular single-stranded satellite DNA which co-infects with certain monopartite helper begomoviruses to cause economically important diseases, such as cotton leaf curl disease (CLCuD). DNA
encodes a single protein,
C1. Tomato leaf curl New Delhi virus (ToLCNDV) is a bipartite begomovirus in which both DNA A and DNA B are required for systemic infection. Inoculation of tomato plants with ToLCNDV DNA A alone induced local but not systemic infection, whereas co-inoculation with DNA A and the DNA
associated with CLCuD resulted in systemic infection. DNA
containing a disrupted
C1 open reading frame (ORF) did not mobilize DNA A systemically. Co-inoculation of plants with DNA A and a construct of the
C1 ORF, under the control of the cauliflower mosaic virus 35S promoter, resulted in the systemic movement of DNA A. In inoculated tobacco and onion epidermal cells,
C1 fused to GFP was localized at the cell periphery in association with punctate bodies, around and within the cell nucleus and with the endoplasmic reticulum. It is concluded that heterologous
C1 protein can replace the movement function of the DNA B of a bipartite begomovirus. Evidence is also provided that tomato leaf curl virus-encoded C4 protein confers the same movement function to ToLCNDV DNA A. The intracellular distribution of
C1 is consistent with the hypothesis that it has a role in transporting the DNA A from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. | INTRODUCTION |
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Small circular single-stranded DNA satellites containing a single open reading frame (ORF), termed DNA
, have been found associated with certain monopartite begomovirus infections. Since they were first reported in 2000, over one hundred full-length DNA
s have been cloned and sequenced (Mansoor et al., 2006
). They consist of approximately 1350 nt and depend on their helper begomoviruses for replication and encapsidation. DNA
contributes to the production of symptoms and enhanced helper virus accumulation in certain hosts. The process through which DNA
regulates pathogenesis is unknown, but it might affect the replication of its helper virus by either facilitating its spread in host plants, or by suppressing host gene silencing (Saunders et al., 2000
). The DNA
-encoded protein,
C1, is the determinant of both pathogenicity and suppression of gene silencing (reviewed by Briddon & Stanley, 2006
).
Depending on the particular begomovirus, five different proteins are involved in mediating virus transport through host plants: the coat protein (CP), the nuclear shuttle protein (NSP), the movement protein (MP), the C4 protein and the V1 protein (Rojas et al., 2005
). Unlike monopartite begomoviruses, the CP of bipartite begomoviruses is not required for cell-to-cell or long-distance movement. For bipartite begomoviruses, cell-to-cell movement function is carried out by two proteins encoded by the DNA B component, NSP and MP. In the case of monopartite begomoviruses, two proteins, V1 and C4, have been implicated in cell-to-cell movement function (Jupin et al., 1994
; Rojas et al., 2001
).
We have demonstrated previously that the DNA
associated with the cotton leaf curl disease (CLCuD) encodes the pathogenicity protein, termed
C1, since transgenic Nicotiana tabacum plants expressing either the
C1 gene or a dimeric DNA
construct produced virus-like leaf curl symptoms (Saeed et al., 2005
). We report here that DNA
can replace the movement function of the DNA B of a bipartite begomovirus, thus showing that it has a role in virus movement.
| METHODS |
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associated with CLCuD, and the DNA A and DNA B of tomato leaf curl New Delhi virus (ToLCNDV) were prepared as described previously (Padidam et al., 1995
C1 gene (Saeed et al., 2005
Inoculation of plants and analysis of viral DNA.
Graft transmission was done by top grafting (Crete et al., 2001
). Inoculation of tomato plants by biolistic bombardment was carried out using partial tandem dimers of ToLCNDV DNA A in pBluescript SK (–), ToLCNDV DNA B in pGem-7zf (+) (Padidam et al., 1995
), a tandem dimer of DNA
in pBluescript SK (+), 35S :
C1 in pART7 (Saeed et al., 2005
), and 35S : TLCV C4 in pJIT163 (Krake et al., 1998
). DNA was deposited onto gold particles and used for inoculation at a rate of 0.5 µg DNA and 250 µg gold particles per plant (Selth et al., 2005
). After inoculation, the plants were grown at 25–27 °C under artificial light (150 µE s–1 m–2) with a 16 h photoperiod.
Viral DNAs were detected by dot blot or Southern blot analysis using 32P-labelled DNA probes to DNA A (EcoRV and PstI fragment, nt 307–2113), DNA B (SpeI and PstI fragment, nt 370–2068), and DNA
(KpnI monomer). The probes were prepared as previously described (Dry et al., 1993
). Plants inoculated with DNA A alone were tested by PCR using DNA A specific primers (798V, 5'-CATCGTGATCGTTATCAAGTCTTA-3' and 1838RC, 5'-TGATCTGAGCCCAAAGGTCTATA-3').
The complete nucleotide sequence of ToLCNDV DNA A in the systemically infected plants was verified using the BigDye Terminator cycle sequencing kit (Applied Biosystems).
Detection of
C1 and C4 mRNA by RT-PCR.
Total RNA from tomato leaf was prepared using Plant RNA Reagent (Invitrogen). First strand cDNA was synthesized using an oligo-dT primer. The cDNA was used as a template with an oligo-dT primer and a gene-specific primer (
C1, 5'-TAACTCGAGATGACACCGAGCGGA-3' or TLCV-C4, 5'-TAACTCGAGATGAGAATGGGGAGC-3') to amplify DNA using the RT-PCR System (Invitrogen).
Subcellular localization of GFP fusion proteins.
pART7-N'gfp, a variant of the shuttle vector pART7, containing the GFP ORF without an initiation codon downstream of the multiple cloning site (Selth et al., 2005
), was used to transiently express
C1–GFP fusion proteins in onion (Allium cepa) and tobacco (Nicotiana tabacum) tissue. Full-length
C1 was amplified from the clone pBS-
(Saeed et al., 2005
) with primers pair P01 (5'-TAACTCGAGATGACACCGAGCGGA-3', XhoI restriction site introduced is underlined) and P02 (5'-GCTCTAGAAACGGTGAACTTTTTAT-3', XbaI restriction site introduced is underlined). The amplified product was digested with XhoI and XbaI and inserted into appropriately digested pART7-N'gfp to generate a
C1 N-terminal fusion with GFP. pART7-ATG : GFP, which expresses free GFP, and pBI121-H2B : YFP, which expresses Arabidopsis histone 2B fused to the GFP yellow variant YFP (Boisnard-Lorig et al., 2001
), were used as controls. Fully expanded Nicotiana tabacum leaves were cut into 1.5x1.5 cm squares and kept on moistened filter paper in Petri dishes. Plasmid DNA was delivered by biolistic inoculation (Selth et al., 2005
). Tissue pieces were kept in the dark for 24 h and GFP expression was visualized using a Bio-Rad Radiance 2100 confocal laser scanning microscope system. Endoplasmic reticulum was identified with aqueous rhodamine B hexyl ester stain (100 µg ml–1) (Molecular Probes). Tobacco leaves inoculated with the
C1–GFP construct were cut into 5x5 mm squares and kept on filter paper moistened with rhodamine B for 30 min. Excitation wavelengths of 488 nm and 543 nm were used for GFP and rhodamine B visualization, respectively.
| RESULTS |
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satellite can substitute for DNA B of a bipartite virus for infection
satellite could influence the pattern of DNA A infection, tomato plants were inoculated with a mixture of DNA A and the DNA
associated with CLCuD (Briddon et al., 2001
in the new symptomatic leaves of 11 plants, whereas new leaves of non-symptomatic plants lacked detectable levels of either DNA (data not shown). Southern blot hybridization at 13–16 d.p.i. confirmed the presence of replicative forms of both DNA A and DNA
in the distal leaves of these plants (Fig. 2a, c
-encoded protein can mobilize ToLCNDV DNA A from sites of inoculation to the distal tissues, presumably by providing the movement function normally provided by DNA B.
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associated with CLCuD encodes a pathogenicity protein,
C1 (Saeed et al., 2005
mutant that had two stop codons introduced in the
C1 ORF (Saeed et al., 2005
accumulated in the inoculated leaves of the 12 plants (Fig. 2a,c
in systemic leaves when tested by Southern blot hybridization (Fig. 2a, c
to mediate systemic spread of DNA A was dependent on
C1 expression.
Transient expression of the
C1 gene enhances local accumulation of ToLCNDV DNA A and permits its systemic movement
It has been shown previously that co-inoculation with tomato golden mosaic virus (TGMV) DNA A and transient expression constructs of the movement proteins BC1 and BV1 encoded by TGMV DNA B, under the control of the CaMV 35S promoter, enhances local accumulation of TGMV DNA A and permits its systemic spread (Jeffrey et al., 1996
). When tomato plants were co-inoculated with ToLCNDV DNA A and the transient expression construct 35S :
C1, a proportion showed mild leaf curling symptoms at 13–16 d.p.i. (Fig. 3c
, Table 1
). Control tomato plants inoculated with either DNA A alone or with a 35S :
C1Mut construct developed no symptoms (Fig. 3b
).
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C1 gene could influence the level of accumulation of ToLCNDV DNA A at the site of inoculation, total nucleic acids from tomato leaves which had been co-inoculated with DNA A and the 35S :
C1 construct were assayed at 13–16 d.p.i. A noticeably higher level of DNA A was observed when it was co-inoculated with the 35S :
C1 construct (Fig. 4a
C1Mut construct (Fig. 4a
C1 gene increases local accumulation of ToLCNDV DNA A in a manner analogous to that which occurs with DNA B in the TGMV system.
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C1 gene at the site of inoculation could also mediate the systemic movement of ToLCNDV DNA A, newly developed leaves of the inoculated plants were assayed at 13–16 d.p.i. DNA A was shown to accumulate in symptomatic systemic leaves of tomato plants that had been co-inoculated with DNA A and the 35S :
C1 construct (Fig. 4b
(Fig. 4b
in these plants when analysed by Southern hybridization (results not shown). Localized expression of
C1 therefore mediates systemic spread of ToLCNDV DNA A.
Transient expression of the TLCV C4 gene also enhances local accumulation of ToLCNDV DNA A and permits its systemic movement
The AC4/C4 protein of 11–19 kDa encoded by begomoviruses has some functional similarities to the
C1 protein, particularly in pathogenicity determination and as a suppressor of host gene silencing (Cui et al., 2005
, Gopal et al., 2007
, Vanitharani et al., 2005
). In contrast, the ToLCNDV DNA A encodes a significantly smaller AC4 protein with a Mr of 6.7 (Padidam et al., 1995
). TLCV is a monopartite begomovirus that requires a C4 ORF, the positional homologue of AC4, for wild-type symptoms (Rigden et al., 1994
). To investigate whether a functional C4 protein might complement missing DNA B functions, the role of TLCV C4 gene in mediating cell-to-cell movement of TLCNDV DNA A was also investigated in further experiments. We tested whether the localized expression of the TLCV C4 gene could enhance local accumulation of ToLCNDV DNA A and mediate its systemic spread using the transient expression system described above. Tomato plants were inoculated with either DNA A alone or together with a transient expression construct of C4. A small proportion of tomato plants inoculated with the infectious construct of DNA A together with the 35S : C4 construct showed mild leaf curling symptoms at 13–16 d.p.i. (Fig. 3d
, Table 1
). In contrast, none of the control plants inoculated with DNA A and the 35S : C4Mut construct developed symptoms.
To determine whether localized expression of the TLCV C4 gene could influence the accumulation of ToLCNDV DNA A in inoculated leaves, leaves of tomato plants that were inoculated with either DNA A alone or together with the 35S : C4 construct were analysed by Southern blotting at 13–16 d.p.i. A noticeably higher level of DNA A was observed when it was co-inoculated with the 35S : C4 construct (Fig. 4a
, lanes 7 and 8) than in leaves inoculated with the DNA A alone, or DNA A with the 35S : C4Mut construct (Fig. 4a
, lanes 1 and 2 and lanes 9 and 10). These results show that localized expression of the C4 gene enhances the accumulation of ToLCNDV DNA A in inoculated leaves.
To investigate whether transient expression of the C4 gene at the site of inoculation could also mediate the systemic movement of ToLCNDV DNA A to the new leaves, at 13–16 d.p.i. newly developed leaves of the inoculated plants were tested by Southern blot analysis. DNA A was detected in newly developing leaves of the symptomatic tomato plants that were inoculated with DNA A and the 35S : C4 construct (Fig. 4b
, lanes 7 and 8), whereas non-symptomatic plants lacked detectable levels of DNA A (Fig. 4b
, lane 9, 10). The level of systemic DNA A accumulation in these plants (Fig. 4b
, lanes 3 and 4) was similar to the levels observed in plants co-infected with DNA A and DNA
(Fig. 4b
, lanes 3 and 4 and lanes 11 and 12). These results show that transient expression of the C4 protein can lead to systemic movement of DNA A, as was shown with
C1.
Wild-type ToLCNDV only requires movement functions at the site of inoculation for systemic infection
We were interested to know whether tomato plants in which DNA A was mobilized from sites of inoculation by transient expression of
C1 or the C4 ORF could sustain systemic infection. Dot blot analyses of symptomatic plants co-inoculated with DNA A and either 35S :
C1 or 35S : C4 showed that DNA A accumulation in these plants at 60 d.p.i. was similar to the DNA A accumulation at 13–16 d.p.i. (results not shown). No
C1 or C4 transcripts were detected in distal tissues by RT-PCR, whereas control plants inoculated with DNA A and DNA
contained the approximately 375 bp product expected from a
C1 transcript (results not shown). Sequence analysis of the DNA A from systemically infected leaves showed that it was identical to that used as the inoculum, and therefore that it had not mutated or recombined with the 35S :
C1 or the 35S : C4 construct.
When scions from these tomato plants were tip-grafted onto healthy tomato plants, mild leaf curling was observed on regrowth from the rootstocks 15–18 days later. Subsequent removal of the scions did not affect the continuing symptom development on the stocks, which remained symptomatic in the glasshouse for up to 1 year, and DNA A was retained throughout this period (data not shown). These results indicate that once ToLCNDV DNA A has spread systemically, it provides the gene functions required for infection.
C1 protein accumulates at the cell periphery, around and inside the nucleus, and co-localizes with the endoplasmic reticulum
The
C1 protein encoded by the DNA satellite associated with tomato yellow leaf curl China virus (TYLCCNV) has been reported to localize to the cell nucleus (Cui et al., 2005
). To test whether the CLCuD
C1 protein also targets the cell nucleus, a construct was synthesized with a translational fusion of
C1 to GFP downstream of the CaMV 35S promoter. The construct was delivered by biolistic inoculation to tobacco and onion epidermal cells and transient expression was analysed by confocal microscopy. The free GFP control showed fluorescence in both the cytoplasm and the nucleus of inoculated cells (Fig. 5a, h
). In contrast, the
C1–GFP fusion protein was seen at the cell periphery, and both around and inside the nucleus (Fig. 5b, i
). In some cells (approx. 20 %),
C1–GFP was associated with punctate bodies (Fig. 5c, j
). We also used the Arabidopsis histone 2B–YFP (Boisnard-Lorig et al., 2001
) as a control for nuclear localization, and found the fusion protein exclusively in the nucleus (Fig. 5d, k
).
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C1–GFP were plasmolysed to separate the plasma membranes from the cell wall, the fluorescence remained associated exclusively with the detached plasma membrane (Fig. 5l, m
C1–GFP were stained with rhodamine, GFP expression (Fig. 5e, n
C1 co-localized with the endoplasmic reticulum (Fig. 5g, p| DISCUSSION |
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satellite associated with Ageratum yellow vein virus has been shown to substitute for the DNA B of Sri Lankan cassava mosaic virus (SLCMV) to allow infection (Saunders et al., 2002
from CLCuD can substitute for the movement function of the DNA B of a bipartite begomovirus. DNA
containing a disrupted
C1 ORF did not mobilize the DNA A for systemic infection, indicating that it was the
C1 protein that was required for movement.
Using biolistic inoculation, it was shown that DNA A components of bean dwarf mosaic virus and Abutilon mosaic virus were delivered only to the outer epidermal and cortical layers of bean hypocotyl tissues, and that their further movement to the vascular tissue required DNA B-encoded gene functions (Levy & Czosnek, 2003
; Gilbertson et al., 2003
; Seo et al., 2004
; Sudarshana et al., 1998
; Wang et al., 1999
). It is therefore likely that ToLCNDV DNA A might have also been delivered to the epidermal tissues where it could replicate, but was unable to spread to the neighbouring cells (Figs 2a
and 4a
). The localized expression of either the
C1 or C4 protein may have provided a cell-to-cell movement function that led to the spread of DNA A to the vascular tissues. This was supported by Southern blotting results, where noticeably higher levels of DNA A accumulated in the inoculated leaves when it was co-inoculated with either the 35S :
C1 or the 35S : C4 construct than in leaves inoculated with DNA A alone, or DNA A with either the 35S :
C1Mut or the 35S : C4Mut construct (Fig. 4a
). This increased accumulation of viral DNA at sites of inoculation is considered to be dependent on cell-to-cell movement (Jeffrey et al., 1996
). Hence, it may be inferred that
C1 protein encodes a cell-to-cell movement function. However, further studies are required to understand the precise role of
C1 in cell-to-cell movement.
In addition to its role in pathogenicity (Cui et al., 2004
; Saeed et al., 2005
; Saunders et al., 2004
) and virus movement (this study),
C1 has been reported to be a suppressor of gene silencing (Cui et al., 2005
; Gopal et al., 2007
). As yet, there is no direct evidence for the involvement of the TLCV-encoded C4 protein in the suppression of gene silencing. However, the AC4/C4 protein homologues, encoded by African cassava mosaic virus, bhendi yellow vein mosaic virus (BYVMV) and SLCMV, have been identified as suppressors of gene silencing (Gopal et al., 2007
; Vanitharani et al., 2005
). Many of the plant virus-encoded suppressors of silencing were initially identified as pathogenicity determinants involved in systemic invasion of host plants (Scholthof, 2005
). It is likely that silencing suppression activity of
C1 and C4 proteins could be acting only by blocking a systemic silencing signal. This could explain why
C1 and C4 proteins are not necessary once the virus reaches the phloem. In a normal situation, without
C1 or C4, primary silencing signals would be produced in the inoculated leaf, migrate from cell to cell and then be amplified by RDR6-like proteins in the systemic cells. The amplification of the secondary silencing signals in the systemic leaves would therefore prevent viral replication in those areas.
C1 and C4 could act by preventing or reducing the production of a primary systemic silencing signal in the inoculated leaf and consequently reducing the production of secondary silencing signal in the systemic leaves. With reduced primary silencing signals, the viral DNA would be able to reach a higher concentration in the inoculated leaf. Also, enough time would remain to establish a systemic infection prior to signal amplification, and the need for
C1 or C4 proteins would be obviated. In agreement with that hypothesis, it has already been documented that Nicotiana benthamiana plants impaired in the reception of primary silencing signals are more vulnerable to viral meristem invasion than wild-type plants (Schwach et al., 2005
). However, further studies are required to elucidate the precise role of suppression of host defence by the
C1 or the C4 protein in the systemic infection of ToLCNDV DNA A.
C1 fused to GFP localized at the cell periphery, around and inside the nucleus of tobacco and onion epidermis cells. It is unclear whether the accumulation in the nucleus is due to the size of the fusion protein (approx. 43 kDa), which is small enough to diffuse passively through the large nuclear pore complex (Gafni et al., 2002
), or is related to some biological role in infection. Recently, Kumar et al. (2006)
have reported that the
C1 encoded by DNA
associated with bhendi yellow vein mosaic disease (BYVMD) is localized towards the periphery of the cell. Together, these patterns of localization are similar to that of the tomato yellow leaf curl virus- and maize streak virus-encoded V1 protein, known to mediate cell-to-cell movement (Kotlizky et al., 2000
; Rojas et al., 2001
). However, Cui et al. (2005)
found that
C1 encoded by DNA
associated with TYLCCNV is targeted largely to the cell nucleus. In this instance,
C1 has a nuclear localization signal (NLS), 45PALAKKK51, and mutation of the NLS resulted in the loss of nuclear localization (Cui et al., 2005
). CLCuD and BYVMD
C1 proteins lack this sequence, providing a possible explanation for their subcellular localization.
Viruses move through infected plants in two steps, cell-to-cell movement via plasmodesmata and long-distance movement through the phloem. Plant viruses use two principal strategies for cell-to-cell movement. One involves binding of movement protein or movement protein complexes with the viral genome, which is either RNA or DNA, and increasing the size exclusion limit of plasmodesmata. The other is dependent on tubule formation (Lucas, 2006
). The results obtained using the transient movement assay (Jeffrey et al., 1996
) indicated that both
C1 and TLCV C4 proteins had a role in cell-to-cell movement function. In the present study, co-localization of the
C1 with endoplasmic reticulum would be consistent with it having a role in intracellular transport from the nucleus to the cell periphery. Recently, Kumar et al. (2006)
showed the interaction of BYVMD
C1 protein with CP using yeast two-hybrid analysis. It is therefore likely that the interaction of CP with
C1 protein might be involved in the cell-to-cell movement of virus, analogous to the cooperative interaction of NSP and MP of bipartite begomoviruses (Gafni et al., 2002
).
Apart from understanding the role of DNA
in viral movement, this study has both epidemiological and pathological implications. Despite their recent discovery, more than 130 DNA
satellite sequences have now been deposited in GenBank (Rojas et al., 2005
). They are associated with monopartite begomoviruses in a wide variety of vegetable and fibre crops, ornamental plants and weeds, mainly throughout Asia and some in Africa (Mansoor et al., 2003
). The DNA
associated with CLCuD is responsible for symptom expression of a devastating disease in Pakistan (Mansoor et al., 2006
). Given the presence of a large number of begomoviruses throughout Asia and Africa, the promiscuity of DNA
for helper viruses and the ability of DNA
to substitute for DNA B, the chance exists that new diseases such as cotton leaf curl may emerge from bipartite begomoviruses in the form of a monopartite or bipartite begomovirus associated with a DNA
satellite. As suggested by Saunders et al. (2002)
, monopartite and bipartite begomovirus do not seem to be separated by a rigid boundary.
| ACKNOWLEDGEMENTS |
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Received 3 April 2007;
accepted 6 June 2007.
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