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1 Virology, Centre for Infectious Diseases, College of Medicine and Veterinary Medicine, University of Edinburgh, Edinburgh EH19 1QH, UK
2 Institute of Technology, University of Tartu, Estonia
Correspondence
John K. Fazakerley
John.Fazakerley{at}ed.ac.uk
| ABSTRACT |
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gene was proportional to virus RNA load. An intact type I IFN system was required for protection against both strains of SFV. IFN strongly curtailed virus spread in many cell types and in many tissues. In mice with an intact type I IFN system, infected cells were rarely observed and tissue tropism was difficult to determine. In the absence of a functional type I IFN system, the tropism and the potential for rapid and widespread infection of this virus was revealed. Virus infection was readily observed in the myocardium, endocardium, exocrine pancreas, adipose tissue, smooth muscle cells and in the brain in meningeal cells, ependymal cells and oligodendrocytes. In the brains of mice with and without type I IFN responses, virus infection of neurons remained rare and focal, indicating that the previously described restricted replication of SFV A7(74) in neurons is not mediated by type I IFN responses.
These authors contributed equally to this work. ![]()
| INTRODUCTION |
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The most characterized avirulent strain of SFV, A7(74), is virulent in mice infected at the age of 11 days or less, but is avirulent in older mice; virus dissemination in the central nervous system (CNS) is increasingly restricted with age (Oliver et al., 1997
). In 4–5-week-old mice, intraperitoneal inoculation of SFV A7(74) results in a high-titre plasma viraemia from which virus is seeded into perivascular foci in the brain and spinal cord; there is little spread of virus from cell to cell, foci do not enlarge with time and the infection is restricted in mature neurons (Fazakerley et al., 1993
). SFV A7(74) remains avirulent following direct intracerebral inoculation, but inoculation by this route results in a widespread infection of oligodendrocytes in the major white matter tracts (Fazakerley et al., 2006
). The underlying events resulting in restriction of this strain of the virus in mature neurons remain undetermined. Intraperitoneal infection with the virulent L10 strain also results in a high-titre plasma viraemia, but in this case neuronal infection is not restricted and perivascular foci of CNS infection rapidly enlarge to give rise to a fatal panencephalitis (Fazakerley et al., 1993
).
The prototype (SFV4) and A7(74) strains are available as molecular cDNA clones (Liljeström & Garoff, 1991
; Vaha-Koskela et al., 2003
). Infectious RNA can be derived by in vitro transcription and infectious virus by electroporation of this RNA into eukaryotic cells. In mice, SFV4 virus is virulent by intranasal or intracerebral inoculation (Fazakerley et al., 2002
; Glasgow et al., 1991
). There are numerous genetic changes between the cDNA clones of SFV4 and SFV A7(74), but changes in non-structural protein 3 and the 5'-untranslated sequences appear to be the most important in determining the ability of the virus to replicate in the adult mouse brain (Tuittila et al., 2000
). Molecular engineering of the SFV cDNA has led to the generation of a series of replicon vectors that are increasingly used for protein expression, transient gene transfer and increasingly importantly vaccination (Karlsson & Liljeström, 2004
). The vector replicon can be packaged into virus-like particles (VLPs), which have the ability to infect cells in the same way as virus (Smerdou & Liljeström, 1999
). Following infection with virus or VLPs, or following transfection of replicon RNA, cells in continuous culture rapidly undergo apoptosis (Allsopp & Fazakerley, 2000
; Glasgow et al., 1997
; Scallan et al., 1997
).
Not long after the discovery of the interferon (IFN) system, it was shown that a crude preparation of IFN derived from West Nile virus-infected mice could protect mice against the virulent MB strain of SFV (Finter, 1966
). In this and subsequent studies, the extent of protection was clearly dependent on virus strain, dose and time of administration (Bradish & Titmuss, 1981
; Smillie et al., 1973
). Conversely, administration of anti-IFN antibodies exacerbated SFV infection (Fauconnier, 1971
). The kinetics of the type I IFN response in SFV A7(74)-infected mice parallels the plasma viraemia (Bradish et al., 1975
). In the original studies on mice with disruption of the type I IFN receptor
-chain (IFNAR-1–/–), it was demonstrated that both adult and neonatal mice without a functional type I IFN system succumbed to infection with SFV much more rapidly than did wild-type (wt) mice (Hwang et al., 1995
; Muller et al., 1994
). The type I IFN system has also been demonstrated to be crucial for the protection of mice from nominally avirulent strains of the related alphaviruses Venezuelan equine encephalitis virus and Sindbis virus (Grieder & Vogel, 1999
; Ryman et al., 2000
). Strains of SFV and eastern equine encephalitis virus vary in their sensitivity to IFN (Aguilar et al., 2005
; Deuber & Pavlovic, 2007
). What remains to be determined for SFV is the role of the type I IFN system following infection with the most commonly used A7(74) and SFV4 strains. Furthermore, not only for alphaviruses but for many neurotropic viruses, the course and role of IFN responses in the brain during virus encephalitis remain to be fully characterized. In the case of SFV encephalitis, it remains to be determined whether the type I IFN system is involved in the restricted replication of A7(74) in neurons and in the age-related virulence (Fazakerley et al., 1993
). Here, we have shown that: (i) both A7(74) and SFV4 activate CNS type I IFN gene expression in the mature mouse brain; (ii) IFN gene expression is proportional to virus load; (iii) the type I IFN response is crucial for protection against SFV A7(74); and (iv) this protection works by strongly curtailing virus spread in many cell types in many tissues including some CNS cell types but is not responsible for the restricted dissemination of SFV A7(74) in mature CNS neurones.
| METHODS |
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SFV4 marker virus containing the gene for enhanced green fluorescent protein (eGFP) was constructed by inserting the coding sequence for eGFP followed by the foot-and-mouth disease virus 2A cleavage sequence between that for the capsid protein and p62 in the virus structural protein open reading frame. This strategy has been used previously to construct an eGFP-labelled Sindbis virus (Thomas et al., 2003
). The resulting SFV4 marker virus, designated SFV4-steGFP, replicated well in vitro and in vivo, and infected cells showed strong green fluorescence (R. Fragkoudis and others, unpublished). SFV4 and SFV4-steGFP were generated from infectious cDNAs as described previously (Liljeström & Garoff, 1991
). Briefly, the plasmid was linearized with SpeI and capped transcripts were produced by in vitro transcription with SP6 polymerase in the presence of m7GpppG cap analogue (Amersham). RNA was electroporated into BHK-21 cells using two consecutive 140 V square-wave pulses with a pulse length of 25 ms on a Bio-Rad Gene Pulser X cell electroporator. Virus stocks were collected after 24 h at 37 °C, titrated on monolayers of BHK-21 cells and used to infect mice.
Virus infectivity assay.
Virus titres were determined by plaque assay on BHK-21 cells as described previously (Fazakerley et al., 1993
). Briefly, BHK cells (4x105) were seeded into six-well plates in 2 ml Glasgow minimum essential medium with 10 % fetal calf serum and incubated at 5 % CO2 and 37 °C until 80 % confluent. The growth medium was then removed, cells washed with PBS and 10-fold dilutions of test samples were titrated in duplicate. Infected cells were incubated for 1 h at room temperature in a humid atmosphere. After the addition of agar, the plates were incubated for a further 48 h and fixed with 10 % neutral buffered formaldehyde for 3 h before staining with 0.1 % toluidine blue for at least 1 h. Plaques were counted after washing.
Mouse strains.
Strain 129/Sv(ev) and 129/Sv(ev) mice with a disruption of the
-chain of the IFN-
/
receptor (IFNAR-1–/–) (Muller et al., 1994
) were purchased from B&K Universal Ltd. BALB/c and CB17 nu/nu mice were purchased from Harlan Olac. Mice were bred and maintained in the Centre for Infectious Diseases Animal Unit, College of Medicine & Veterinary Medicine, University of Edinburgh, UK, in specific-pathogen-free and environmentally enriched conditions with food and water supplied ad libitum. All breeding and experimental studies were agreed by the University of Edinburgh Ethical Review Committee and were carried out under the authority of a UK Home Office licence.
Infection of mice.
Experimental infection of mice was carried out at 4–6 weeks of age. Mice were inoculated intraperitoneally with 0.1 ml PBS with 0.75 % BSA (PBSA) containing 5x103 p.f.u. SFV or intracranially with 20 µl PBSA containing 103 p.f.u. virus or with PBSA alone. Mice were checked twice daily and euthanized on reaching previously defined clinical end points considered to be indicative of fatal disease; these included: paralysis in two or more limbs; inability to move, feed or drink; incontinence; breathing difficulties; and seizures. Mice to be sampled were deeply anaesthetized with halothane and perfused with PBS through the left cardiac ventricle; brains were removed, divided bilaterally down the midline and either placed in RNAlater for RNA analysis, snap frozen on dry ice for virus titration or immersion fixed in 10 % phosphate-buffered formal saline for histopathological study.
RNA extraction and quantitative PCR.
RNA was extracted from frozen cell-culture pellets or tissue samples stored in RNAlater using Qiagen kits according to the manufacturer's instructions; the RNeasy Lipid kit was used for brain samples. Extracted RNA was stored at –80 °C. The quality of the extracted RNA was determined using an Agilent 2100 Bioanalyser and the RNA 6000 Nano assay. High-quality RNA samples were reverse transcribed using Superscript II RNase H reverse transcriptase. Samples to be directly compared were reverse transcribed at the same time using the same master mix (all reagents were from Invitrogen). The reaction mixture had a final volume of 20 µl and contained 1 µl oligo(dT)12–18 primer, 5 µg RNA template, 1 µl 10 mM dNTPs and DNase/RNase-free water to a volume of 12 µl. The mixture was heated for 5 min at 65 °C. Next, 4 µl 5x First-strand buffer, 2 µl 0.1 M DTT and 1 µl RNasin recombinant RNase inhibitor were added. Reactions were incubated at 42 °C for 2 min and 1 µl reverse transcriptase was added. The reactions were incubated at 42 °C for 1 h. The enzyme was inactivated by incubation for 15 min at 70 °C. The cDNA was stored at –20 °C.
Levels of viral RNA and IFN transcripts were determined by real-time quantitative (Q)PCR. Test samples and standards were assayed in triplicate. QPCR was performed using a FastStart DNA Master SYBR Green I kit (Roche). Briefly, in a total volume of 20 µl (made up in RNase-free water), reaction mixes contained: 50 pM primers, 40 mM dNTPs, 10x buffer plus 2 mM MgCl2, SYBR Green (diluted 1 : 20 000; Biogene), 5 U FastStart Taq (Roche Applied Science) and 2 µl cDNA. Tubes were heated to 94 °C for 5 min and 40 cycles of 94 °C for 20 s, 62 °C for 20 s and 72 °C for 20 s were carried out on a RotorGene 3000 (Corbett Research). As a positive control for SFV, an in vitro transcript from the pGEM1-SFV cDNA plasmid containing the structural genes of SFV was transcribed using a Promega RiboMax kit. Serial dilutions of this plasmid were used to produce a standard curve for quantification of the PCR amplicons and thus the virus RNA. Brain samples were normalized to levels of
-actin transcripts (Brown et al., 2003). Sequences of the primers used in the assay were as follows: IFN-
: 5'-AGGACAGGAAGGATTTTGGA-3' and 5'-GCTGCTGATGGAGGTCATT-3' (degenerate primers based on IFN-
4; McKimmie & Fazakerley, 2005); SFV E1: 5'-CGCATCACCTTCTTTTGTG-3' and 5'-CCAGACCACCCGAGATTTT-3'; IFN-
: 5'-CACAGCCCTCTCCAT CAACT-3' and 5'-GCATCTTCTCCGTCATCTCC-3';
-actin: 5'-CGTTGACATCCGTAAAGACC-3' and 5'-CTGGAAGGTGGACAGTGAG-3'.
In situ hybridization.
To observe virus distribution in the brain, after immersion fixation in 10 % phosphate-buffered formal saline, half brains were embedded in paraffin and 5 µm sections cut onto poly-L-lysine-coated (Sigma) or Biobond-coated (British BioCell International) glass slides. Riboprobes were transcribed in vitro with T7 polymerase (using a Riboprobe Gemini kit; Promega) from HincII-linearized pGEM1-SFV. As a control, some sections were hybridized with a riboprobe to the P1 region of the unrelated Theiler's virus. Probes were hydrolysed in 0.04 M NaHCO3 for 30 min at 60 °C prior to use. In situ hybridization with 35S-labelled riboprobes was carried out as described previously (Fazakerley et al., 1993
). Autoradiographic images of sections hybridized with 35S-labelled riboprobes were produced by exposure of air-dried sections to Hyperfilm
max (Amersham). Sections were subsequently dipped in photographic emulsion (LM-1, diluted with 0.66 M ammonium acetate; Amersham) and exposed, usually for 7 days, at 4 °C.
Histopathology.
Immunostaining to detect SFV-infected cells in paraffin-embedded tissues sections was performed as described previously (Fazakerley et al., 2006
). Tissues to be studied for the distribution of eGFP-positive cells were fixed in 10 % phosphate-buffered formal saline overnight and examined on a Zeiss fluorescent stereomicroscope with a GFP filter before cryopreserving by sequential passage through 5, 10 and 25 % sucrose in PBS. After freezing in OCT, 12–14 µm sections were cut onto poly-L-lysine-coated glass slides using a cryomicrotome. Sections were stained with propidium iodide to visualize cell nuclei or were lightly stained with diaminobenzidine to allow visualization of the tissue structure (this preserved the eGFP signal better than conventional stains such as haematoxylin).
| RESULTS |
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At 3 and 7 days p.i., all (10/10) mice infected with SFV A7(74) had infectious virus and IFN-
gene transcripts detectable in the brain (Table 1
), demonstrating that the type I IFN system was activated in response to neuroinvasion by this strain of the virus. The levels of infectious virus and the induced levels of IFN-
transcripts showed considerable variation between individual mice. For the virus titres, this was consistent with previous studies (Fazakerley et al., 1993
). Presumably, variation resulted from temporal and spatial differences in virus neuroinvasion among individual mice. Interestingly, for individual mice there was a very strong correlation (r2=0.98) between levels of virus RNA and levels of IFN transcripts (Fig. 1a
); the higher the brain virus titre, the higher the level of IFN transcripts. Presumably, the greater the number of virus-infected cells, the greater the number of cells producing IFN.
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Direct intracerebral inoculation of SFV4 results in widespread brain infection and activation of IFN gene expression
Following intracerebral inoculation, SFV4 replicates efficiently in the CNS and produces a widespread infection (Fazakerley et al., 2002
). To determine whether this infection activates IFN gene transcription, SFV4 was inoculated intracerebrally into six 4–5-week-old BALB/c mice. Two mice were each sampled at 12, 24 and 40 h p.i. Infectious brain virus titres were detectable in all mice at all time points. IFN-
gene transcripts were detectable in three out of six mice, with a mean titre of 102.9 copies per 105 copies of
-actin (Fig. 1b
). SFV4 thus had no deficit in its ability to replicate in the brain and this replication activated IFN-
gene expression.
IFN gene transcription in the brain continues during persistent infection
In mice with severe combined immunodeficiency (SCID) or athymic nu/nu mice, SFV A7(74) establishes a persistent infection of the brain; athymic nu/nu mice survive this infection longer than SCID mice (Amor & Webb, 1986
; Fazakerley & Webb, 1987
). To determine whether the brain IFN response remained activated during persistent infection, CB17 nu/nu mice were inoculated intraperitoneally with 5000 p.f.u. SFV A7(74), exsanguinated, perfused and the brains assayed at 3, 7 and 140 days p.i. Infectious virus and IFN transcripts were detectable in all mice at all three time points (Table 1
).
Type I IFN is required for protection against SFV A7(74)
To determine whether the type I IFN system is required to protect adult mice against intraperitoneal infection with SFV, groups of ten 129/Sv(ev) mice lacking the
-chain of the IFN-
/
receptor (IFNAR-1–/–) (Muller et al., 1994
) and IFN-competent 129/Sv(ev) mice were inoculated intraperitoneally with 5000 p.f.u. SFV A7(74) or SFV4 and monitored for clinical disease. All 129/Sv(ev) mice inoculated with SFV4 or A7(74) survived without clinical signs for the 10 days studied. SFV4 virus is transcribed from a molecular clone derived from the SFV prototype virus, a virus closely related to SFV L10. Both prototype and L10 are virulent, even at low doses, in adult mice (Bradish et al., 1971
). It was surprising, therefore, that inoculation of 5000 p.f.u. SFV4 intraperitoneally was avirulent in 129/Sv(ev) mice. For comparison, a group of ten 129/Sv(ev) mice were inoculated intraperitoneally with 5000 p.f.u. SFV L10 virus. These mice all died or reached clinically defined terminal end points on day 3. It was concluded that, relative to virulent L10 virus, SFV4 has an attenuated phenotype when given intraperitoneally. In contrast to the survival of 129/Sv(ev) mice, all IFNAR-1–/– mice inoculated with SFV A7(74) or SFV4 died or reached clinically defined terminal end points within 3 days. The fact that SFV4 and SFV A7(74) are rapidly virulent in IFNAR-1–/– mice but not in IFN-competent mice demonstrated that type I IFN strongly and successfully suppresses these strains of this virus.
Type I IFN in the brain controls viral infection of meningeal and ependymal cells but is not responsible for the restricted infection of neurons
Given that SFV A7(74) is efficiently neuroinvasive and neurotropic and that infection with this strain of virus is restricted in mature neurons of the adult mouse brain (Fazakerley et al., 1993
) and that brain infection is associated with an IFN response (Fig. 1a
), it was postulated that mortality in the IFNAR-1–/– mice was due to widespread encephalitis. To determine the role of the type I IFN response during brain infection, IFNAR-1–/– and 129/Sv(ev) mice were inoculated intraperitoneally with 5000 p.f.u. SFV A7(74) and the distribution of virus-infected cells in the brain was visualized by in situ hybridization at 16 and 40 h p.i. (Fig. 2
). The IFNAR-1–/– mice had moderate or substantial clinical signs, but no or only small foci of virus-infected cells in the brains (Fig. 2
). This low level of infection was inconsistent with the clinical signs, indicating that the mice were unlikely to succumb to this infection due to events in the brain. To observe the tropism and spread of A7(74) virus in the brain and to determine whether the type I IFN response was required for the restriction of SFV A7(74) replication in neurons, mice were inoculated directly intracerebrally. In both 129/Sv(ev) and IFNAR-1–/– mice, virus-positive cells were observed predominantly in the major white matter tracts such as the corpus callosum and the internal capsule (Fig. 2
); this confirmed the distribution observed previously with direct intracerebral inoculation of A7(74) virus in wt mice (Fazakerley et al., 2006
). In the IFNAR-1–/– but not the 129/Sv(ev) mice, many virus-positive cells were observed in the meninges and in ependymal cells lining the ventricles, demonstrating that IFN normally protects these cells (Fig. 3
). However, the extent of neuronal infection was no different between the two mouse strains. In both mouse strains, infection of neurons was confined to a few cells around the white matter tracts or to small foci scattered around the brain. In the IFNAR-1–/– mice, infection did not spread from the cells in the extensively infected white matter tracts, meninges and ependyma to adjacent neuronal populations (Figs 2
and 3
). It was concluded that the restricted replication of A7(74) virus in the neurons of the adult mouse brain does not require an intact type I IFN system.
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| DISCUSSION |
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gene transcripts directly proportional to those of viral RNA: the more viral RNA, the more IFN transcripts. Other studies have shown that the type I IFN system is activated in the brain in response to inoculation of poly I : C and to infection with viruses including rabies virus, Theiler's virus, La Crosse virus, simian immunodeficiency virus and lymphocytic choriomeningitis virus (Barber et al., 2004
The type I IFN system has been shown to protect mice against the spread of other viruses in the CNS including Theiler's virus, Bunyamwera virus, Dugbe virus, Hantaan virus, influenza A virus, vesicular stomatitis virus, lymphocytic choriomeningitis virus, Sindbis virus and Venezuelan equine encephalitis virus (Boyd et al., 2006
; Bridgen et al., 2001
; Fiette et al., 1995
; Garcia-Sastre et al., 1998
; Grieder & Vogel, 1999
; Koerner et al., 2007
; Muller et al., 1994
; Ryman et al., 2000
; Wichmann et al., 2002
). Few studies have detailed the CNS cell types protected by this IFN response. As documented previously, SFV A7(74) is efficiently neuroinvasive, but in the adult mouse brain it is restricted in its ability to replicate in and spread between mature neurons (Fazakerley et al., 1993
, 2006
; Oliver & Fazakerley, 1998
; Pusztai et al., 1971
). Mouse neurons, both in culture and in the adult mouse brain, can respond to IFNs (Ousman et al., 2005
; Wang & Campbell, 2005
; Wang et al., 2002
; Ward & Massa, 1995
). This response could underlie the restricted replication of SFV A7(74) in neurons. Here, however, we showed that this restricted replication is not mediated by type I IFN responses; A7(74) replication in mature neurons remained restricted, even in the absence of type I IFN responses. Type I IFN responses did, however, control replication of SFV A7(74) in meningeal and ependymal cells, as these cells were infected only rarely in wt mice. Type I IFN responses have also been shown to protect ependymal cells from measles virus, meningeal cells from Sindbis virus and oligodendrocyte, ependymal and choroid plexus cells from Theiler's virus infections (Fiette et al., 1995
; Mrkic et al., 1998
; Ryman et al., 2000
). Given that, in the absence of type I IFN responses, SFV A7(74) does not establish a widespread infection of the brain parenchyma, other factors must be operating to restrict replication of this virus in mature neurons. We have previously suggested that the restricted replication of A7(74) in the mature neurons of the adult mouse brain is linked to neuronal differentiation and, in particular, to the availability of freshly synthesized intracellular membranes and their constituent lipids (Oliver & Fazakerley, 1998
; Oliver et al., 1997
; Scallan & Fazakerley, 1999
).
We have shown that, although type I IFN does not contribute to the restricted phenotype of SFV A7(74) in adult brain neurons, it is essential to prevent virus spread in extraneural tissues. Several other viruses, including avirulent strains of the related alphavirus Sindbis virus, which, like SFV A7(74), produces subclinical or even unapparent infection, also establish widespread infections in IFNAR-1–/– mice (Bray, 2001
; Mrkic et al., 1998
; Muller et al., 1994
; Ryman et al., 2000
). In the case of SFV4 and SFV A7(74), infection was observed in multiple tissues with a similar extent of infection and tropism for both viruses. Whether SFV tropism is determined by entry or post-entry events is unclear. The receptor for this virus and its cellular distribution remain unknown. In the absence of an IFN response, the cell types with the greatest degree of infection were the acinar cells of the exocrine pancreas and adipocytes. To enable their secretion of large amounts of digestive enzymes, pancreatic acinar cells contain large amounts of rough endoplasmic reticulum and have a highly vesiculated cytoplasm. Similarly, adipocytes contain many vacuoles and have a highly developed lipid metabolism. Extensive replication of SFV A7(74) in these cell types would be consistent with a requirement for lipids and freshly synthesized membranes, as suggested for neurons. In the absence of the IFN response, infection of heart valves was consistently observed and was more extensive than infection of other parts of the heart. This could have resulted from a greater exposure of the valves to the high titres of virus in the blood or alternatively from an increased susceptibility of this tissue to infection. In mice, enteroviruses have been shown to preferentially infect valve tissues and some patients with chronic rheumatic heart disease have evidence of enterovirus replication in valve tissue (Burch et al., 1966
; Li et al., 2002
). In the spleens of IFNAR-1–/– mice, SFV was predominantly observed in cells of the marginal zone, most likely macrophages or dendritic cells. A similar distribution was observed in IFNAR-1–/– mice infected with Sindbis virus where these cells were shown to be cells of the macrophage/dendritic cell lineage (Ryman et al., 2000
).
Many RNA viruses antagonize IFN responses (Haller et al., 2006
). Viruses, even strains of the same virus, also differ in their susceptibility to the actions of IFN. The virulent L10 strain of SFV is less sensitive to IFN than the avirulent V42 strain (Deuber & Pavlovic, 2007
). That SFV A7(74) and SFV4 infections are much more widespread in IFNAR-1–/– mice demonstrates the power of the type I IFN system to control these strains; however, it does not preclude the possibility that SFV and other alphaviruses also antagonize IFN responses (Breakwell et al., 2007
; Fazakerley et al., 2002
; Frolov, 2004
; Garmashova et al., 2007
). Antagonism of the IFN response is unlikely to be absolute; the timing and the magnitude of IFN induction, action and suppression relative to the rate of virus replication are likely to determine the extent of virus spread. What is clear is that, in the mouse, the IFN response to SFV A7(74) and SFV4 is sufficient to severely curtail the spread of these viruses in many tissue systems.
| ACKNOWLEDGEMENTS |
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Received 29 May 2007;
accepted 28 July 2007.
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