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1 Haartman Institute, Department of Virology, University of Helsinki, PO Box 21, FIN-00014 Helsinki, Finland
2 Department of Biochemistry, University of Cambridge, Cambridge CB2 1GA, UK
3 Institute of Biotechnology, EM-Unit, University of Helsinki, PO Box 56, FIN-00014 Helsinki, Finland
4 Department of Virology, University of Turku, Kiinamyllynkatu 13, FIN-20520 Turku, Finland
Correspondence
Camilla Krogerus
Camilla.krogerus{at}helsinki.fi
| ABSTRACT |
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A supplementary table showing oligonucleotides used in this study is available in JGV Online.
| INTRODUCTION |
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Concomitantly with replication-complex formation, PV has been shown to induce a general blockage of cellular protein secretion (Doedens & Kirkegaard, 1995
) that, together with the cellular-membrane modifications and the inhibition of host-cell protein synthesis, plays an essential role in the intracellular pathology of infection.
Parechoviruses are different in many biological properties from other picornaviruses (Stanway et al., 1994
). Among their unique features are natural resistance to guanidine hydrochloride (Tamm & Eggers, 1962
) and insensitivity to brefeldin A (Gazina et al., 2002
). The biochemical properties of the human parechovirus 1 (HPEV-1) non-structural proteins also differ from those described for other picornaviruses (Samuilova et al., 2004
, 2006
; Schultheiss et al., 1995
). Moreover, we have shown that the replication complex of HPEV-1 is substantially different from its enteroviral counterpart (Krogerus et al., 2003
). In HPEV-1-infected cells, virus replication takes place in several small, discrete foci in the cytoplasm, rather than in large accumulations of membranous vesicles. Also, the membrane vesicles seen harbouring HPEV-1 RNA are smaller in diameter then their enteroviral counterparts. Furthermore, whilst in PV-infected cells, the viral non-structural protein 2C is found exclusively associated with the virus replication complex (Bienz et al., 1994
; Egger et al., 2000
), the HPEV-1 2C protein is also found on modified ER membranes seemingly not involved directly in viral RNA replication (Krogerus et al., 2003
).
To identify individual viral proteins that can cause membrane rearrangements, different regions encoding individual proteins of several positive-strand RNA viruses have been expressed in a variety of cell types. Expression of PV 2C protein, a 329 aa membrane-associated protein with ATPase activity (Mirzayan & Wimmer, 1994
; Rodriguez & Carrasco, 1993
), has been shown to target the ER and to cause both membrane vesiculation and formation of multilamellar structures (Aldabe & Carrasco, 1995
; Cho et al., 1994
). Upon expression of the 426 aa precursor protein 2BC, more extensive vesiculation, more consistent morphologically with the pattern seen in PV-infected cells, has been observed (Cho et al., 1994
). In particular, the combined actions of the non-structural proteins 2BC and 3A have been found to mimic both the biochemical and ultrastructural alterations in PV-infected cells (Suhy et al., 2000
).
To date, most studies on the effects of picornavirus non-structural proteins on intracellular morphology have been carried out by using enterovirus proteins. The cellular effects of the non-structural proteins of another picornavirus, Foot-and-mouth-disease virus (FMDV), have been shown to differ substantially from those of the enterovirus non-structural proteins (Moffat et al., 2005
), suggesting that molecular mechanism of cellular pathology may differ significantly between different picornavirus groups.
The aim of our present work was to study whether the distinctive characteristics of the HPEV-1 replication complex and the cellular pathology observed during infection (Coller et al., 1990
; Wigand & Sabin, 1961
) could be explained by specific membrane alterations and other intracellular events induced by individual viral non-structural proteins. In cells expressing individual viral non-structural proteins [2A, 2B, 2C, 2BC, 3A, 3AB and 3D as haemagglutinin (HA)- and green fluorescent protein (GFP)-tagged fusion proteins], 2A and 3D could be seen diffusely in the cytoplasm and nucleus, whereas 2B, 2C, 2BC, 3A and 3AB were detected at precise locations in the cytoplasm. The 2B protein was found in the ER, 2C and 2BC were found surrounding lipid droplets and 3A and 3AB co-localized with a marker for the Golgi apparatus. The parechovirus non-structural proteins were found not to induce intracellular changes similar to those seen during viral infection when expressed in isolation, and co-expression of the proteins did not change their individual localizations. However, some of the 2C-positive structures in transfected cells were found to associate with viral RNA in superinfected cells. Similar to other picornaviruses, HPEV-1 was found to interfere with cellular protein secretion, but this function could not be ascribed to any of the individually expressed non-structural proteins.
| METHODS |
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Cloning and expression procedures.
The pEGFP-C1 vector (Clontech) was used for the expression of HPEV-1 non-structural proteins 2A, 2B, 2C, 2BC, 3A and 3AB as fusions to the C terminus of enhanced GFP (EGFP) (Fig. 1
). The primers used for amplification of selected coding regions in pHPEV-1 cDNA are shown in Supplementary Table S1 (available in JGV Online). The pCI-neo mammalian expression vector (Promega) was used for constructing a plasmid that contains an N-terminal HA epitope tag (YPYDVPDYA) and a multiple cloning site, using the oligonucleotides shown in Supplementary Table S1. HA2C was recloned from the pGex2C vector (Krogerus et al., 2003
). HA2B, HA3AB, HACBV-3 2C and HACBV-3 2BC were constructed by amplification of the respective regions using primers that can be seen in Supplementary Table S1.
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Antibodies (Abs).
The production of rabbit antisera against HPEV-1 non-structural protein 2C and CBV-3 2C has been described previously (Auvinen et al., 1993
; Krogerus et al., 2003
).
To visualize the Golgi apparatus, mAbs against giantin (a gift from Professor Hans-Peter Hauri, Biozentrum, University of Basel, Switzerland), as well as the cis-Golgi protein GM130 (Transduction Laboratories) and the trans-Golgi protein p230 (Transduction Laboratories), were used. The ER was detected with a mAb against BAP31, kindly provided by E. Kuismanen, Viikki Biocenter, University of Helsinki, Finland. A mAb against HA (Babco) was used to visualize the HA-tagged proteins and a rabbit Ab against the GFP tag (Molecular Probes) to detect the EGFP-fusion proteins by electron microscopy (EM) and to intensify the signal prior to hybridization with RNA probes.
Goat anti-rabbit and anti-mouse Alexa 488- and Alexa 546-labelled Abs (Molecular Probes) were used as secondary antibodies in immunofluorescence (IF). In immunoelectron microscopy (IEM), 1.4 nm diameter gold particle-conjugated Fab' fragments, termed Nanogold (Nanoprobes), against rabbit or mouse IgG were used.
IF and fluorescent in situ hybridization (FISH).
Cells grown on coverslips were fixed with 4 % paraformaldehyde and permeabilized with 0.2 % Triton X-100 (Sigma). Indirect IF was performed and the cells were mounted in glycerol containing 1 % N-propyl gallate (Sigma). The subcellular localization of VSVGGFP was determined by expressing either VSVGGFP alone or VSVGGFP together with a fusion protein at 40 °C. After a temperature shift to 32 °C, the cells were fixed, stained and analysed by confocal laser-scanning microscopy (CLSM).
Lipid droplets were visualized with Oil Red O (Sigma) solution (0.1 % in 60 % 2-propanol for 20 min).
For detection of viral genomic RNA, riboprobes of complementary polarity, covering the entire viral sequences, were prepared from plasmid pHPEV-1 and plasmid pCBV-3. In vitro transcription in the presence of Alexa 546-conjugated UTP (Molecular Probes) was performed with T3 RNA polymerase and T7 RNA polymerase, respectively. The probes were subjected to alkaline hydrolysis to generate fragments of approximately 100 nt in length and hybridized to the cells at 42 °C overnight as described previously (Bolten et al., 1998
; Egger et al., 1999
; Krogerus et al., 2003
). The specimens were mounted in glycerol containing 2.5 % (w/v) DABCO (Sigma). Conventional light microscopy was performed by using a Zeiss Axioplan 2 microscope, and confocal microscopy was carried out with a confocal laser-scanning microscope (Leica SP2 confocal microscope). For co-localization studies, pictures were recorded sequentially and corrected for contrast and intensity with Adobe Photoshop software.
IEM.
For IEM, A-549 cells grown on coverslips were fixed with PLP fixative (2 % paraformaldehyde, 0.01 periodate and 0.075 M lysine/HCl in 0.075 M phosphate buffer, pH 7.4) for 2 h. The cells were permeabilized with 0.01 % saponin (Sigma) and immunolabelled with anti-GFP or anti-2C antibody and Nanogold, which was subsequently silver-enhanced with an HQ Silver kit (Nanoprobes) and gold-toned with 0.05 % gold chloride. After washing, the cells were dehydrated in an alcohol series and processed for Epon embedding as described previously (Seemann et al., 2000
). Sections were post-stained with uranyl acetate and lead citrate and examined with a JEOL JEM-1200EX II electron microscope.
| RESULTS |
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Because of their distinct localization and to exclude the possibility that a large GFP tag could interfere with the protein localization, the 2B, 2C and 3AB proteins were studied further through the construction of a fusion protein containing the small (9 aa) HA tag. As expected, the HA2B protein formed a similar pattern to 2BEGFP, the HA2C protein was seen in similar spherular structures to 2CEGFP and the HA3AB protein accumulated in the perinuclear area like 3ABEGFP. Double transfection of EGFP- and HA-fusion proteins showed perfect co-localization (data not shown) and similar staining patterns were seen in transfected A-549 and HeLa cells (data not shown).
The 2B protein co-localizes with the ER and the 3AB protein with the Golgi apparatus
To study the localization of the fusion proteins more precisely, confocal microscopy using cellular markers and IEM were performed. The 2B proteins were found to co-localize with BAP31, a marker for the ER (Fig. 3ac
), and IEM confirmed the localization of the protein in the ER (Fig. 4c
). The ultrastructures of the ER, the Golgi and other parts of the 2B-transfected cells were not altered compared with control cells (Fig. 4a
).
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The 2C protein is found mainly on lipid droplets, but also on diverse intracellular membranes
Interestingly, the 2C protein exhibited a spherular staining pattern in transfected cells. These spherules were usually found in close vicinity to trans-Golgi structures (data not shown). IEM revealed that the majority of the protein was situated on the surface of lipid droplets (Fig. 4d, e
). Similar lipid droplets were also found in untransfected control cells (Fig. 4a
). The protein also partially localized on Golgi and ER membranes; however, no obvious change in the morphology of the Golgi or the ER could be observed. The association of the 2C protein with lipid vacuoles was further confirmed by Oil Red O staining (Fig. 3gi
). Because of the central role that has been ascribed to the 2C and 2BC proteins in enterovirus replication-complex formation, CBV-3 HA2C and HA2BC fusion proteins were constructed for comparison. The CBV-3 2C protein was found to form a reticular pattern with a perinuclear accumulation (Fig. 3j
). This is consistent with earlier findings suggesting that the main target of the enterovirus 2C protein is the ER. The CBV-3 2BC protein could be found in a quite similar pattern to 2C; however, the perinuclear accumulation was generally more extensive (Fig. 3k
).
It has been reported for several different viruses that it is the combined action of several non-structural proteins, rather than individual proteins, that mediates the ultrastructural changes seen in the infected cell (Salonen et al., 2003
; Suhy et al., 2000
). We therefore co-expressed 2BEGFP with HA3AB (Fig. 5a
), 2CEGFP with HA2B (Fig. 5b
) and 2CEGFP with HA3AB (Fig. 5c
). The localization of the individual proteins did not change significantly in co-transfected cells; however, 2B and 3AB were found to co-localize partially in the perinuclear region (Fig. 5a
).
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As HPEV-1 infection results in a disintegration of the Golgi apparatus, it was not surprising that the staining pattern of the expressed 3AB protein changed in the infected cells. The protein formed a diffuse reticular structure and additional vesicular structures appeared (Fig. 5fg
). No specific co-localization with either viral 2C protein (Fig. 5f
) or with viral RNA could be seen (Fig. 5g
). Expressed 3AB protein behaved in a similar manner to the 3A protein (data not shown).
Interestingly, in 2C-transfected, superinfected cells, the structures containing 2CEGFP partially co-localized with viral RNA (Fig. 5jl
). The co-localization did not seem to involve the lipid droplets, but rather dot-like structures in the perinuclear area, suggesting that the portion of the protein residing on ER and Golgi membranes could relocate to sites of viral RNA synthesis.
Effect of HPEV-1 infection and non-structural proteins on the secretory pathway
It has been shown that several picornaviruses, as well as individually expressed viral non-structural proteins, can inhibit ER-to-Golgi transport (Doedens & Kirkegaard, 1995
; Moffat et al., 2005
). We studied the effect of HPEV-1 infection and the individual non-structural proteins on the movement of membrane proteins from the ER into the secretory pathway by using a GFP-tagged ts045-VSVG protein, a well-known membrane-bound secretory marker (Toomre et al., 1999
). At the non-permissive temperature (40 °C), VSVGGFP was retained in the ER (Fig. 6a
), which was confirmed by using antibodies against the ER protein BAP31 (data not shown). Upon shifting to the permissive temperature (32 °C), the protein was transported out of the ER and, after 45 min, the majority of the protein was found in the Golgi complex (Fig. 6b
), co-localizing with the Golgi protein giantin (data not shown). After 2 h, VSVGGFP was localized mostly on the plasma membrane (Fig. 6c
). To investigate whether HPEV-1 infection inhibits vesicular trafficking, A-549 cells were transfected with VSVGGFP, incubated at 40 °C for 24 h and then infected with HPEV-1. The infected cells were further incubated at 40 °C for 4 h and then shifted to 32 °C for 2 h. The cells were fixed and stained with an antibody against GFP before being subjected to FISH, and VSVGGFP localization was analysed by CLSM. In HPEV-1-infected cells, VSVGGFP was retained in the ER (Fig. 6df
), suggesting that protein transport was blocked between the ER and the Golgi. However, cells co-transfected with VSVGGFP and 2BHA (Fig. 6gi
), 2CHA (Fig. 6jl
) or 3ABHA (Fig. 6mo
) and incubated at 40 °C for 24 h before being shifted to 32 °C for 2 h did not exhibit inhibition of protein transport.
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| DISCUSSION |
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The purpose of this study was to examine the possible involvement of the 2C protein and other non-structural proteins in replication-complex formation and to study their individual localization and possible membrane modifications. The 2A and 3D proteins were found diffusely in the cytoplasm and, particularly, the 3D protein was found concentrated in the nucleus. The 2B, 2C, 2BC, 3A and 3AB proteins were found at precise locations in the transfected cells: 2B on the ER, 2C and 2BC mainly on lipid droplets, but also on Golgi and ER membranes, and 3A and 3AB on Golgi membranes. None of the proteins studied was able, alone or in combination, to induce changes in the intracellular morphology similar to those seen in HPEV-1-infected cells. However, 2CEGFP was partially redirected to the virus replication complexes in transfected, HPEV-1-infected cells, suggesting that a subset of the 2C protein is able to relocate to the sites of viral RNA synthesis.
Recently, new data have been obtained about the intracellular alterations induced by different picornaviruses, as well as by individual picornaviral proteins (Knox et al., 2005
; Krogerus et al., 2003
; Monaghan et al., 2004
). Among the picornaviruses, RNA replication complexes from enterovirus-infected HeLa cells have been the best studied; however, the precise mechanism of replication-complex formation remains elusive. COP II-mediated vesicle budding from the ER has been suggested to occur during formation of the replication vesicles at the beginning of infection (Rust et al., 2001
), and data implicating the cellular autophagic pathway have also been presented (Schlegel et al., 1996
; Suhy et al., 2000
). Very recently, the ARF family of small GTPases has been found to be involved in PV RNA replication, a finding that may explain the sensitivity of enterovirus replication to BFA (Belov et al., 2005
). When expressed in isolation, the enterovirus 2C and 2BC proteins have been shown to induce extensive rearrangements of intracellular membranes and vesicles resembling those seen during viral infection (Aldabe & Carrasco, 1995
; Cho et al., 1994
). The 3A protein has also been implied in the formation of the enterovirus replication complex (Suhy et al., 2000
), most recently by the finding that individual expression of the protein can translocate different ARFs to membranes (Belov et al., 2005
). The 2C and 2BC proteins of Hepatitis A virus have also been shown to cause membrane rearrangements (Teterina et al., 1997
); the relationship of these to the formation of the virus replication complex is, however, not clear.
Individually expressed HPEV-1 2C and 2BC proteins were found to associate with lipid droplets, but also with ER and Golgi membranes. No apparent rearrangements of intracellular membranes could be seen. This suggests that 2C alone is not sufficient to generate the membranous changes seen during HPEV-1 infection, although the finding that transfected 2C can associate with viral RNA in superinfected cells suggests that the protein may interact with cellular and/or viral factors present in the replication complex. Pairwise co-transfection of the HPEV-1 non-structural proteins did not change the individual staining patterns. It has been shown for other viruses, however, that several or all of the replicative proteins might be needed for correct localization of the replicative machinery (Becker et al., 2003
; Salonen et al., 2003
). However, the inability of the expressed proteins to induce membrane changes similar to those seen during infection could also be a result of misfolding or malfunction of the proteins, a possibility that cannot be excluded by the experiments presented here.
Recently, more information has been obtained on the nature of lipid droplets (Martin & Parton, 2005
; Tauchi-Sato et al., 2002
). They have proved to be active cellular organs with close ties to a special subset of the ER (Tauchi-Sato et al., 2002
). Interestingly, a hepatitis C virus (HCV) non-structural protein, NS5A, has been shown to associate with lipid droplets, as well as Golgi and ER membranes, when expressed in isolation (Shi et al., 2002
). HCV has several features in common with picornaviruses, and the NS5A protein is similar to the picornaviral 2C protein in that it has an amphipathic
-helix in the N-terminal region (Teterina et al., 2006
). The helix is thought to represent an individual module that is responsible for the protein's association with membranes in the virus replication complex (Teterina et al., 2006
). However, in cells containing HCV subgenomic replicons, the protein is not associated with lipid droplets, but rather with a structure of modified membranes termed the membranous web, presumably derived from ER membranes (Egger et al., 2002
; Mottola et al., 2002
). Another study has associated the protein with lipid rafts and caveolin-2, a protein that is found also on lipid droplets (Shi et al., 2003
). In HPEV-1-infected cells, the 2C protein co-localizes both with a trans-Golgi marker and with modified ER membranes (Krogerus et al., 2003
). The relationship of the 2C protein with lipid rafts has not been investigated. It is, however, tempting to speculate that, during HPEV-1 replication-complex formation, the 2C protein might interact with certain ER proteins or a subregion of the ER, as well as with other viral components, to form a specialized membrane compartment.
The enterovirus 2B protein is an integral membrane protein that is localized predominantly at the Golgi complex upon individual expression (de Jong et al., 2003
). Expression of the protein releases calcium from intracellular stores and increases plasma-membrane permeability to calcium and low-molecular-mass compounds (Aldabe et al., 1996
; Doedens & Kirkegaard, 1995
; Lama & Carrasco, 1992
; van Kuppeveld et al., 1997a
, b
). It also interferes with the anterograde membrane-transport pathway (Doedens & Kirkegaard, 1995
). Individually expressed FMDV 2B protein has been localized to the ER (Moffat et al., 2005
). In this study, HPEV-1 2B fusion proteins localized to the ER and the morphology of the ER and Golgi was similar to that in control cells. At very high levels of expression, the 2B protein caused rearrangement of the ER membranes into large, vacuolar structures (data not shown). It is known, however, that such aberrant structures can form in response to the overexpression of ER-localized proteins (Snapp et al., 2003
). Whether the permeability of the secretory membranes is increased in HPEV-1-infected cells or cells expressing HPEV-1 2B protein is currently not known and warrants further studies.
The 3A proteins of both enteroviruses and FMDV have been shown to reside in the ER when expressed individually and have been found to interfere with ER-to-Golgi transport (Doedens et al., 1997
; O'Donnell et al., 2001
; Wessels et al., 2005
). The expressed HPEV-1 3A-fusion proteins were found to co-localize with the Golgi without causing any gross changes in the intracellular morphology. We show here that, similarly to other picornaviruses studied, HPEV-1 inhibits cellular secretion. However, the individual protein responsible for this feature seems to be neither 3A, like in enteroviruses (Doedens et al., 1997
), nor 2BC, like in FMDV (Moffat et al., 2005
). At present, we cannot rule out the possibility that other precursor proteins, unique to HPEV-1, and/or the concomitant translation of the viral polyprotein are responsible for inhibiting cellular secretion in HPEV-1-infected cells.
Despite overall similarities, picornaviruses employ remarkably different mechanisms in replication-complex formation. It also seems that the functions of individual proteins in the virus replication cycle and the induction of intracellular pathology cannot be derived directly from the properties of analogous proteins of other picornaviruses.
| ACKNOWLEDGEMENTS |
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Received 15 May 2006;
accepted 6 November 2006.
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