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1 Department of Pathology, University of Texas Medical Branch, Galveston, TX 77555-0609, USA
2 Center for Biodefense and Emerging Infectious Diseases, Sealy Center for Structural Biology, University of Texas Medical Branch, Galveston, TX 77555-0609, USA
3 Department of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555-0609, USA
Correspondence
Norbert K. Herzog
nherzog{at}utmb.edu
| ABSTRACT |
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, while reducing the binding to AP-1 promoter elements. Administration of XBY-S2 to Pichinde virus-infected guinea pigs resulted in a significant reduction in Pichinde virus-induced mortality and enhanced the expression of cytokines from primary guinea pig macrophages, which may contribute to its ability to increase survival of Pichinde virus-infected guinea pigs. These data demonstrate a proof of concept that thioaptamers can be used to modulate the outcome of in vivo viral infections by arenaviruses by the manipulation of transcription factors involved in the regulation of the immune response.
Dr Robert E. Shope died 19 January 2004 in Galveston. ![]()
Present address: Department of Microbiology, University of Pennsylvania, Philadelphia, PA 19104, USA. ![]()
| INTRODUCTION |
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have been associated with fatal PICV infection of guinea pigs (Aronson et al., 1995
Members of the AP-1 family of transcription factors are key regulators of a wide range of cellular processes including cell proliferation, cell death, cell differentiation, oncogenesis, inflammation and innate immune responses (Adcock, 1997
). While not as strongly associated with the immune response as the NF-
B family of transcription factors, it is still involved in the transcriptional regulation of T-cell receptor alpha (Giese et al., 1995
), beta-interferon (IFN-
) (Du et al., 1993
; Merika et al., 1998
; Thanos & Maniatis, 1995
), TNF-
(Falvo et al., 2000
; Tsai et al., 2000
) and other genes important to an antiviral immune response (Chinenov & Kerppola, 2001
).
Similar to the NF-
B family, the AP-1 transcription factors are composed of various dimers which can act as positive or negative regulators of transcription. The subunits are basic regionleucine zipper proteins of the Jun, Fos, Maf, ATF and cAMP response element-binding (CREB) protein subfamilies. The best-studied activator dimers are the Fos/Jun dimers, which bind to the canonical AP-1 site, and the CREB dimers, which bind to the similar CRE sites with some level of cross-binding. The significance of the various dimer combinations and binding sites are not fully understood at this time (Shaulian & Karin, 2001
, 2002
; Karin & Shaulian, 2001
; De Cesare et al., 1999
). The c-Jun, c-Fos and FosB proteins contain transactivation domains, while Fra-1, Fra-2 and some splice variants of FosB do not (Chinenov & Kerppola, 2001
) and can act as negative regulators at AP-1-binding sites (Suzuki et al., 1991
; Sonobe et al., 1995
). The regulation of AP-1 activity is complex and occurs through: (i) changes in jun and fos transcription and mRNA turnover, (ii) Fos and Jun protein turnover, (iii) post-translational modifications of both Fos and Jun proteins that modulate their activities and (iv) interactions with other transcription factors.
Transcription factors such as AP-1 and NF-
B can be targeted for inhibition using RNA and DNA oligonucleotides acting as decoy aptamers, which bind and act as direct in vivo inhibitors. Various studies have demonstrated the potential of using specific decoy oligodeoxynucleotides (ODNs) as therapeutic or diagnostic reagents, and to dissect the specific roles of particular transcription factors in regulating the expression of various genes (Bielinska et al., 1990
; Cho-Chung et al., 1999
; Eleouet et al., 1998
; Jin & Howe, 1997
; Mann, 1998
; Morishita et al., 1995
, 1998
; Osborne et al., 1997
; Tomita et al., 1999
; Park et al., 1999
). Dithiophosphate oligonucleotides (S2-ODNs) and monothiophosphate oligonucleotides (S-ODNs), are taken up efficiently by cells and have enhanced binding to proteins (Marshall & Caruthers, 1993
; Yang et al., 2002a
; King et al., 2002
). We previously developed thiophosphate-backbone modified aptamers (thioaptamers) targeting NF-
B p50 and RelA p65 (Yang et al., 1999
).
In this study, we identify the binding specificity of a thioaptamer oligonucleotide, XBY-S2, that recognizes AP-1 and can be used to modulate the basal levels of macrophage cytokine expression as well as the expression of cytokines in response to stimulation with LPS. This thioaptamer alters cytokine gene expression in macrophage cell lines as well as primary macrophages and we show that it protects animals from a potentially lethal PICV infection.
| METHODS |
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-32P]ATP (DuPont NEN) under standard reaction conditions. Oligonucleotides containing phosphorodithioates (XBY-S2, XBY-S1 and XBY-6) were synthesized using phosphorothioamidite chemistry as previously described (Yang et al., 1999
Antibodies and recombinant proteins.
Antibodies specific for ATF-2 (#9222), phosphorylated ATF-2 (#9221), c-Jun (c-JunB; #9162), phosphorylated c-Jun (#9261S), CREB (#9192) and phosphorylated CREB (#9191) were purchased from Cell Signaling Technology. Antibodies specific for c-Fos (210-128), FosB (210-114), JunD (210-111) and JunB (210-112) were purchased from Alexis Biochemicals. Antibodies directed against Fra-1 (SC183X), Fra-2A (SC171X), Fra-2B (SC13017X), cAMP-responsive element modulator (CREM), JunB (SC73X), JunD (SC74X) and FosB (SC703X) were purchased from Santa Cruz Biotechnology. Antibody against c-Fos (c-FosA) was purchased from BD Biosciences and antibody to c-Jun (c-JunA) was purchased from Delta Biolabs. Human recombinant c-Jun was purchased from Promega.
Cell lines and culture conditions.
70Z/3 (murine pre-B lymphocyte) cells were maintained in RPMI medium supplemented with 5 % fetal bovine serum (FBS), 1 %
-mercaptoethanol and 2 mM glutamine. They were treated with 10 µg Salmonella enterica serovar Typhosa LPS (W0901; Difco) ml1 for 6 h prior to extraction. P388D1 (murine monocyte-like) cells were maintained in RPMI medium supplemented with 5 % FBS and 2 mM glutamine. When indicated, they were treated with 0.1 µg LPS ml1 prior to processing for extracts. Alternatively, P388D1 cells were stimulated with poly(I : C) (25 µg ml1; Sigma-Aldrich) in Aim V medium (Invitrogen).
Thioaptamer treatment of P388D1 cells.
P388D1 cells were plated in T25 flasks in Aim V medium (Invitrogen). Oligonucleotide (25 µg) was mixed with 50 µl liposomes (Tfx-50, Promega) in 500 µl Aim V medium and added to the cells. Following a 2 h incubation, poly(I : C) (Sigma-Aldrich) was added to a final concentration of 25 µg ml1 and the cells were incubated for an additional 18 h before harvesting for nuclear extract preparation. Culture supernatants were used for cytokine measurements.
Electrophoretic mobility shift assay (EMSA).
Nuclear extracts were prepared following standard procedures as described previously (Dyer et al., 1993
). For EMSA reactions, 15 µg nuclear extract was incubated with 0.1 pmol radiolabelled oligonucleotide in a 15 µl volume under standard reaction conditions [20 mM HEPES (pH 7.5), 50 mM KCl, 2.5 mM MgCl2, 20 mM dithiothreitol (DTT), 10 % glycerol, plus 50 µg poly(dI : C) and 0.1 mg BSA ml1] (Dyer & Herzog, 1995
). For competition experiments, a 35-fold excess of unlabelled oligonucleotide was also added. For supershift experiments, nuclear extracts were incubated with antibody overnight at 4 °C in a 15 µl volume under standard reaction conditions in buffer lacking poly(dI : C) prior to the addition of the radiolabelled oligonucleotide and 50 µg poly(dI : C).
Microaffinity isolation assay.
Microaffinity purification (MAP) of proteins binding to the AP-1 and XBY-S2 oligonucleotides was performed by a two-step biotinylated DNAstreptavidin capture assay (Casola et al., 2000
). In this assay, duplex oligonucleotides were chemically synthesized containing 5' biotin on a flexible linker (Bio-Synthesis). Dithioated aptamers with the biotin linker were synthesized in house. One milligram of P388D1 cell nuclear extract was incubated at 4 °C for 30 min with 50 pmol biotinylated AP-1 or XBY-S2, in the absence or presence of a 10-fold molar excess of non-biotinylated wild-type or mutated AP-1 sites. The binding buffer contained 8 µg poly(dI : C) (as non-specific competitor) and 5 % (v/v) glycerol, 12 mM HEPES, 80 mM NaCl, 5 mM DTT, 5 mM MgCl2 and 0.5 mM EDTA. One hundred microlitres of a 50 % slurry of prewashed streptavidinagarose beads was then added to the sample, which was incubated at 4 °C for an additional 20 min with gentle rocking. Pellets were washed twice with 500 µl binding buffer and the washed pellets were resuspended in 100 µl 1x SDS-PAGE sample buffer. After SDS-PAGE separation, proteins were transferred to Immobilon P (Millipore) membranes for immunoblot analysis.
Immunoblots.
Samples (1020 µg) were electrophoresed by standard SDS-PAGE (8 % gels) and transferred to Immobilon-P. Filters were blocked in 5 % non-fat dry milkTris-buffered saline (TBS) overnight and then incubated with a primary antibody diluted in milkTBS plus 100 mg BSA ml1 for 1 h. Following a series of TBSTween (0.5 %) washes, the filters were incubated with horseradish peroxidase-conjugated secondary antibody in milkTBSBSA for 1 h. Following another series of washes, the filters were soaked in the Pierce SuperSignal chemiluminescent substrate (Pierce Biotechnology) and exposed to film.
Cytokine assays.
IL-12p40, IL-12p40/p70, IL-6 and TNF-
from mouse cells were measured using ELISA kits (Biosource International) following the instructions of the manufacturer. Guinea pig TNF-
was measured by bioassay (Flick & Gifford, 1984
) and guinea pig IL-8 was measured using an ELISA kit for human IL-8 (R&D Systems).
Stably transfected reporter P388D1 assays of thioaptamer action.
A reporter vector containing the firefly luciferase gene with AP-1 cis-enhancer elements (pHTS-AP1) was obtained from Biomyx Technology. Control vectors had a multiple cloning site in lieu of enhancer sequences upstream of the reporter gene (designated pHTS-MCS). P388D1 cells were maintained prior to transfection in Dulbecco's modified Eagle's medium (DMEM) supplemented with 10 % FBS, 100 U penicillin ml1 and 100 µg streptomycin ml1. Cells were transfected using the calcium phosphate precipitation method and were subsequently placed in medium containing 300 µg hygromycin ml1. After 34 weeks, colonies were screened for the presence of the reporter gene by stimulating monolayers with 20 ng recombinant human TNF-
ml1 (R&D Systems), and assaying for luciferase activity 624 h later using the luciferase assay system (Promega). The P388D1 cells stably transfected with the pHTS-AP1 luciferase reporter plasmid were maintained with high-glucose DMEM containing 300 µg hygromycin ml1 and 10 % FBS. For the testing of thioaptamer influence on the expression of the AP-1 driven luciferase reporter gene, 5x105 P388AP1 cells were seeded into the wells of a six-well plate and grown at 37 °C overnight. XBY-S2 (10 µg per well) was added to the appropriate wells and the cultures were grown for an additional 18 h. LPS (100 ng ml1) was then added to the appropriate wells. Each control and treatment group consisted of three wells. After 6 h, the cells were rinsed twice with PBS and then lysed by the addition of 400 µl 1x lysis buffer per well (40 mM Tricine pH 7.8, 50 mM NaCl, 2 mM EDTA, 1 mM MgSO4, 5 mM DTT and 1 % Triton X-100) and incubated for 15 min at room temperature with gentle rocking. Samples were either used immediately to assay the luciferase activity or stored at 80 °C.
Virus and aptamer/liposome preparation.
Pooled guinea pig spleen stock of PICV P18 virus derived from Pichinde Munchique strain (CoAn 4763) was diluted to 1000 p.f.u. ml1 in endotoxin-free PBS containing Ca2+ and Mg2+. For XBY-S2 and XBY-S1 treatment, Tfx-50 liposomes (Promega) were used as a delivery vehicle, with a constant lipid : DNA charge ratio of 1.3 : 1 (Ono et al., 1998
) and prepared according to the manufacturer's instructions. Aptamer/liposome was then diluted in endotoxin-free PBS containing Ca2+ and Mg2+ to a final concentration of 50 µg aptamer ml1.
Animal XBY-S2 treatment/virus inoculation.
Male Hartley outbred guinea pigs, approximately 6 weeks old, were obtained from Charles River Laboratories (colony K81). Guinea pigs were treated 2 h prior to virus infection with a 1 ml intraperitoneal (ip) injection of XBY-S2 in liposomes (50 µg thioaptamer ml1). A control group received an ip injection of endotoxin-free PBS only. Two hours after the first XBY-S2/liposome injection, 1000 p.f.u. PICV P18 was inoculated ip into guinea pigs. Two days post-virus infection, guinea pigs received a second injection of thioaptamer/liposomes or PBS at the same dose as day 0. Compiled data from two separate experiments are shown, representing a total of 18 guinea pigs per group. For XBY-S1 treatment, the injections were given 1 day before infection and on days 1 and 3 post-infection, with six animals per group.
Thioaptamer treatment of primary guinea pig macrophages.
Peritoneal macrophages from three male outbred Charles River guinea pigs (350 g each) were harvested by aseptic peritoneal lavage with 100 ml sterile PBS (Ca- and Mg-free). The cells were collected by centrifugation, resuspended in 2.5 ml red cell lysis buffer (0.15 M NH4Cl, 0.1 mM Na2EDTA, 1.0 mM KHCO3, pH 7.3) and placed in a 37 °C incubator for 5 min with occasional mixing. We then added 2.5 ml 1x RPMI 1640 medium supplemented with 10 % (v/v) FBS, 100 U penicillin ml1, 100 µg streptomycin ml1 and 2 mM L-glutamine and plated cells into 96-well plates at a concentration of 1x105 cells per well. Cells were then treated with XBY-S2 for 24 h. The supernatants were collected and analysed for TNF-
by bioassay (Aronson et al., 1995
; Flick & Gifford, 1984
) and IL-8 using a human IL-8 ELISA (R&D Systems) previously shown to be applicable for measuring guinea pig IL-8 (Kuo et al., 1997
).
Statistics.
Where indicated, statistical significance of differences between groups was determined using Student's t-test. LogRank analysis was performed to compare survival curves for treated and untreated animals (Sigmastat 3.0; Systat Software).
| RESULTS |
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have been associated with fatal PICV infection of guinea pigs (Aronson et al., 1995
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B nor an interferon-stimulated response element (ISRE)-binding site was capable of competing for binding, indicating that these immune-associated transcription factors are not bound by XBY-S2 (Fig. 2a
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Treatment of P388D1 cells with XBY-S2 eliminates AP-1 DNA-binding activity
XBY-S2 includes a consensus AP-1-binding site [5'-TGA(G/C)TCA-3'] and, when used as a decoy aptamer, it would be expected to influence the expression of cytokines from macrophages by acting to sequester the AP-1 proteins in cells. In order to demonstrate that XBY-S2 functions as a decoy, P388D1 macrophage cultures were treated in triplicate with liposomes, either with or without XBY-S2, for 2 h prior to stimulation with LPS; liposomes were used to deliver the thioaptamer into cells more efficiently. XBY-S0 was used as a control oligonucleotide since it contains the same base composition as the XBY-S2 oligonucleotide, though it does not contain any dithioate modifications. Nuclear extracts were harvested at 16 h post-stimulation with LPS and analysed by EMSA. The EMSA gels were quantified, to allow statistical analysis, and the results are depicted graphically in Fig. 4(a)
. Treatment of cells with XBY-S2 significantly reduced the AP-1-binding activity. Treatment with the control oligonucleotide XBY-S0 led to a non-significant reduction of AP-1-binding activity and was significantly higher than the levels of AP-1 in the XBY-S2-treated cells. Therefore, the XBY-S2 thioaptamer appears to be an efficient and specific inhibitor of AP-1 transcription factor DNA-binding activity.
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XBY-S2 perturbation of cytokine expression in P388D1 cells in response to poly(I : C)
Poly(I : C) is a potent inducer of cytokine expression through Toll-like receptors (Alexopoulou et al., 2001
). To determine whether XBY-S2 can influence cytokine gene expression, cytokines elaborated from macrophages following poly(I : C) stimulation were measured in combination with prior treatment with the XBY-S2 thioaptamer. As above, liposomes were used to deliver the aptamer more efficiently. A 2 h pre-treatment with XBY-S2 increased the expression of IL-12p40+p70 (sixfold), IL-6 (3.5-fold), and TNF-
(1.7-fold) over the levels expressed in cells stimulated with poly(I : C) alone (Fig. 5
). IL12p70 was only detectable in those cells treated with XBY-S2 and poly(I : C). Interestingly, liposome treatment without thioaptamer appeared to suppress cytokine gene expression under these conditions. These data suggest that either binding of AP-1 proteins to the XBY-S2 decoy aptamer eliminates transcriptional repressors of these cytokines, or a specific set of AP-1 proteins regulates the expression of another protein that serves as a repressor. These data also suggest that XBY-S2 modulation of AP-1 proteins alters the expression of pro-inflammatory cytokines that could influence innate immunity induced in response to viral challenge.
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by standard bioassay and IL-8 was measured by ELISA based on human IL-8. These two cytokines were chosen because they are among the few guinea pig macrophage-derived cytokines for which available standardized assays exist, and because AP-1 is known to be important in regulation of their transcription (Hoffmann et al., 2002
expression, but there was no clear dose dependence at higher doses. Therefore, these data, in part, confirm the results seen in the P388D1 cell line, which indicate that XBY-S2 either directly targets AP-1 proteins that repress the transcription of these cytokines, or AP-1 regulates the expression of another protein that serves as a repressor. XBY-S2 does not block the activities of transcription factors that activate the expression of these cytokines. However, XBY-S2 increases the basal level of expression of pro-inflammatory cytokines that could influence innate immunity induced in response to viral challenge.
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| DISCUSSION |
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Inhibition of macrophage activation would favour viral spread, as activation of macrophages is known to increase the microbicidal action of these phagocytes (Oswald et al., 1992
). Therefore, treatment with an immunomodulating agent such as the thioaptamer XBY-S2 may alter the expression of a number of cytokines that are important in generating an effective early innate response, in the development of the protective Th-1 type antiviral response critical in determining the outcome of infection, and ultimately the development of the adaptive immune response. In previous studies, macrophages explanted from PICV-infected guinea pigs and stimulated ex vivo with LPS showed some suppression of TNF-
induction (Aronson et al., 1994
; Fennewald et al., 2002
). We previously described that the attenuated PICV P2 variant is associated with the appearance of activated forms of transcription factors NF-
B in macrophages, while the lethal PICV P18 variant is associated with the non-activated state of these transcription factors that appears to correlate with a failure to mount an effective immune response (Fennewald et al., 2002
). Here we demonstrate that modulation of the DNA-binding activity of another transcription factor, AP-1, appears to eliminate the repression of cytokine gene expression, elevating the basal and, in some circumstances, the induced cytokines. Modulation of AP-1 is capable of protecting guinea pigs from lethal PICV infection and we hypothesize that this is the result of changes in host cell gene expression that counteract inhibitions by pathogenic PICV.
Though we were somewhat surprised to find that our most active aptamer was binding to AP-1, it is known that AP-1 is important in the immune response (Adcock, 1997
). Although there are over 50 members of the AP-1 family of proteins and potentially over 1000 different homo- and heterodimeric forms (Newman & Keating, 2003
), the majority of the detectable AP-1 DNA-binding activity in mouse macrophages consists of dimers that include Fra-2 and JunB. As Fra-2 can also negatively regulate c-Jun activity (Suzuki et al., 1991
; Sonobe et al., 1995
) and can form heterodimers with JunB that act as transcriptional repressors in keratinocytes (Rutberg et al., 1997
), it is conceivable that the negative influence of c-Jun and JunB on basal cytokine expression in macrophages may arise from formation of repressive Jun/Fra-2 heterodimers. The treatment of macrophages with the thioaptamer XBY-S2 can completely abrogate AP-1 DNA binding activity and hence could be acting as a decoy to effectively outcompete the repressive Jun/Fra-2 dimers. By modulating the activity of AP-1 we have shown that we can increase the expression of several key cytokines including TNF-
, IL-8, IL-6 and IL-12 and increase the survival of guinea pigs to lethal PICV infection.
The increased expression of IL-12 may be particularly important. It is consistent with the inhibitory action of some AP-1 dimers and the work of Roy et al. (1999)
, who demonstrated that a deficiency in c-Fos increased macrophage IL-12 production. Previous research has demonstrated that IL-12 administration at low doses can be efficacious in mice infected with LCMV, resulting in inhibition of virus replication and enhanced CD-8 responses (Orange et al., 1995
). Similarly, low doses of IL-12 are also effective in protecting mice against Encephalomyelocarditis virus, Murine hepatitis virus and herpes simplex virus, and promotes clearance of vesicular stomatitis virus while having other positive effects on the outcome of a number of other virus infections (Komastu et al., 1998
). Though we are unable to confirm the observations in vivo in PICV-infected guinea pigs due to the lack of antibody reagents or a bioassay, the increase in IL-12 production following XBY-S2 treatment could contribute to the efficacy in the animal.
As with all treatments, it is not entirely proven that the in vivo efficacy is due to the measured in vitro activity that the ability of XBY-S2 to prolong survival is due to its in vitro ability to inhibit AP-1 proteins. While phosphorothioate oligonucleotides are known to give strong non-specific effects, our modestly modified aptamers continue to show specific binding in assays and only the XBY-S2 aptamer showed significant protection in the animal model. Still, we cannot rule out the possibility that additional activities, including Toll-like receptor responses, are important in the in vivo efficacy. The XBY-S2 activity increases the interest in the AP-1 proteins and their significance in both positive and negative regulation of the immune response.
Inhibition of AP-1 with XBY-S2 treatment increases cytokine gene expression and protects against virus infection. It is of interest to note that Lassa virus infection of macrophages leads to the release of virus particles, but not to an increase in TNF-
, IL-1
, IL-12p35 and p40, IL-10, IL-6, TGF-
, IFN-
or CD25 synthesis (Baize et al., 2004
). Interestingly, these authors also demonstrated that Lassa virus infection of dendritic cells led to the expression of elevated levels of IL-8 but no other chemokines. Therefore, our data using virulent PICV correlate with results from studies with Lassa virus that indicate that there is viral suppression of the normal response of macrophages and dendritic cells to dsRNA or viral infection.
| ACKNOWLEDGEMENTS |
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Received 25 August 2006;
accepted 10 November 2006.
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