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Research Institute for Bioresources, Okayama University, Kurashiki, Okayama 710-0046, Japan
Correspondence
Tetsuo Tamada
ttamada{at}rib.okayama-u.ac.jp
| ABSTRACT |
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Present address: China Agricultural University, Beijing 100094, China. ![]()
| INTRODUCTION |
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It is known that viral proteins associated with symptom severity often function as suppressors of RNA silencing (Brigneti et al., 1998
; Voinnet et al., 1999
; Silhavy & Burgyán, 2004
; Li & Ding, 2006
). In the case of BNYVV, the RNA2-encoded p14 protein (cysteine-rich protein) has a transgene silencing suppressor activity in leaf tissue (Dunoyer et al., 2002
; Kondo et al., 2005
; Zhang et al., 2005
). Because of the above-mentioned involvement of BNYVV RNA3 and RNA4 in symptom expression, it is of interest to know whether these RNA-encoding genes of p25 and p31 contribute to suppression of RNA silencing in shoots and roots. In fact, there is no information as to how the activities of RNA silencing suppressors differ in different organs such as shoots and roots.
In this study, we present evidence that the RNA4-encoded p31 open reading frame (ORF) is required for efficient vector transmission but is also involved in enhanced symptom expression in a host-specific manner. In addition, we show that neither p25 nor p31 is able to suppress RNA silencing in leaves, but that p31 enhances the ability of BNYVV to suppress silencing in roots.
| METHODS |
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Md1,
Md2,
Md3,
Cter and
ORF (see Fig. 1
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P. betae inoculation was conducted as described previously (Tamada & Abe, 1989
; Tamada & Kusume, 1991
). Sugar beet and B. macrocarpa were used as test plants for vector transmission tests. They were all grown in special test tubes (24 x 120 mm with a drainage hole) filled with quartz sand. The plants (one plant per tube) were maintained in a growth cabinet at 24 °C with a 16 h light/8 h dark cycle and watered every day with nutrient solution (Tamada et al., 1989
). To prepare virus-carrying P. betae cultures, RNA3-containing BNYVV isolates were rub-inoculated onto the leaves of B. macrocarpa plants. For RNA3-lacking or defective isolates, partially purified virus was carefully rub-inoculated onto the roots of B. macrocarpa plants (as these viruses are not systemically infected by foliar rub-inoculation) and were transplanted into test tubes. Virus-free P. betae was used to infest the roots of these plants. After 1 month, virus-infected rootlets of B. macrocarpa were collected, dried and used as inoculum sources for further transmission. Under this inoculation condition, a large number of resting spore clusters in root epidermal cells was observed in all inoculated plants. The dried rootlets for inoculum were ground with distilled water, and the crude homogenates and a series of 10-fold dilutions were added to test tubes in which healthy sugar beet seedlings were grown.
Production of p31 ORF-transgenic N. benthamiana plants.
Transgenic N. benthamiana plants carrying the p31 ORF sequence were produced as described previously (Andika et al., 2005
). The p31 ORF sequence was amplified by PCR using forward primer 5'-TCTAGAAATCAAATCTCAAATATAT-3' (XbaI site in italics) and reverse primer 5'-GAGCTCTAATCGTGATAAAAGACAA-3' (SacI site in italics). The PCR-amplified fragment was cloned into the pZErO-2 cloning vector and inserted between the 35S cauliflower mosaic virus promoter and nopaline synthase terminator sequence of the binary vector pBI121. This construct was transformed into Agrobacterium tumefaciens LBA4404 and subsequently into N. benthamiana plants.
Silencing suppression assay.
For the patch co-infiltration assay, each of the p31 and p25 ORFs was amplified by PCR on the BNYVV cDNA clones and inserted between the XbaI and BamHI restriction sites of the pBin61 binary Ti vector (Voinnet et al., 2000
) to obtain pBin-p31 and pBin-p25. pBin-HC-Pro, which carries the coding domain of HC-Pro (a known silencing suppressor of potato virus Y), was used as a positive control. The Agrobacterium (strain C58C1) culture containing pBin-p31, pBin-p25 or pBin-HC-Pro was mixed with bacteria carrying pBin-GFP and the mixtures were infiltrated into the leaves of N. benthamiana plant line 16c, as described by Voinnet et al. (1998)
. For another silencing suppression assay, leaves of N. benthamiana plant line 16c were infiltrated with the bacteria containing pBin-GFP. After 2025 days, when silencing was achieved against GFP transcripts in the whole plant, systemic leaves were inoculated with BNYVV isolates. At 1417 days post-inoculation (p.i.), when systemic symptoms began to appear, roots of the infected plants were partially removed and the plants were transplanted into new pots to enhance root growth. GFP fluorescence in leaves and new roots was examined under a UV lamp and with a fluorescence microscope (Zeiss Axioskop), respectively.
Northern and Western blot analyses.
Northern blot analysis of total RNA from leaf or root tissue was performed as described previously (Andika et al., 2005
). The blot was hybridized with digoxigenin-labelled DNA probes specific for the BNYVV RNA1 (nt 58156531), RNA2 (nt 144711), RNA3 (nt 4441104) and RNA4 (nt 3771225) sequences. GFP mRNA was detected by hybridization with a digoxigenin-labelled DNA probe. Equal loading was verified by visual estimation of ethidium bromide-stained 28S rRNA. Western blot analysis was the same as for a tissue imprinting assay described previously (Andika et al., 2005
). Rabbit anti-BNYVV polyclonal IgG and rabbit anti-p14 protein serum were used for detection of the coat protein and p14 protein, respectively.
ELISA and RT-PCR.
ELISA and RT-PCR were conducted for quantitative and qualitative detection of virus content and viral RNA, as described previously (Andika et al., 2005
).
| RESULTS |
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Md1,
Md2,
Md3,
Cter,
ORF and CCG, and wt RNA4 (Fig. 1
ORF mutant did not contain the expected short sequence; therefore, these two mutant viruses were excluded from transmission experiments. As controls, the original field isolate O11 and laboratory isolates O11-4 (RNA1+2+4) and O11-3d4 (RNA1+2+3d+4) were also used for transmission in parallel (Table 1
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BNYVV p31 ORF enhances symptom expression in B. macrocarpa, B. vulgaris subsp. maritima M8 and T. expansa
BNYVV RNA3 is responsible for rhizomania symptoms (massive proliferation of rootlets and yellowing of shoots) in sugar beet (Tamada et al., 1999
), but the role of RNA4 in symptoms remains unknown. First, we examined the effect of RNA4 on symptoms using viruliferous P. betae. P. betae cultures carrying O11, O11-3d4 or several RNA4 mutants as described above were inoculated into the roots of B. macrocarpa and B. vulgaris subsp. maritima M8, which are host plants for distinguishing the virulence of BNYVV isolates (Tamada, 2007
). Two to three weeks after vector inoculation, BNYVV O11 produces yellowing symptoms on B. macrocarpa leaves, a characteristic leaf symptom of BNYVV infection. Compared with infection by O11-3/wt or O11, plants inoculated with O11-3, O11-3/
Md1, O11-3/
Md2, O11-3/
Md3 and O11-3/
Cter had slightly milder yellowing symptoms (data not shown). In contrast, infection by O11-4 or O11-3d4 failed to induce yellowing symptoms and the infected plants were indistinguishable from the mock-inoculated plants. In parallel experiments carried out in B. vulgaris subsp. maritima M8, similar results were obtained (data not shown). Northern blot analysis of virus-infected roots of B. macrocarpa plants showed no dramatic differences in levels of viral RNA accumulation (RNA1, RNA2 and RNA3) between O11 and O11-3 with any of the RNA4 mutants (Fig. 2
). In addition, the presence or absence of RNA3 had no influence on accumulation levels of RNA1, RNA2 and RNA4 (Fig. 2
). These results indicated that RNA3-encoded p25 is essential for yellowing symptoms in B. macrocarpa, whilst RNA4-encoded p31 is involved in an increase in yellowing symptoms in the presence of p25 without alteration in accumulation of viral RNA.
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BNYVV RNA4 but not RNA3 is associated with severe symptoms in N. benthamiana
N. benthamiana is a systemic host of BNYVV (Andika et al., 2005
), in which BNYVV induces a downward curling of the upper leaves by 1012 days p.i. Infected plants are stunted and the first leaves to undergo curling gradually wilt. After 3 weeks or more, the symptoms change to a severe mosaic with leaf distortions (called severe symptom) (Fig. 3a
, top left panel). This is characteristic of BNYVV infection of N. benthamiana. Nevertheless, much milder symptoms are observed occasionally, in which infected plants are not stunted and show only mild symptoms (called mild symptom) (Fig. 3a
, top right panel).
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To confirm the effects of RNA3 and RNA4 on symptoms and viral RNA accumulation, BNYVV RNAs extracted from leaves infected with O11-3, O11-4 or O11-0 were inoculated onto N. benthamiana leaves. Infection by O11-4 induced severe symptoms in all 20 plants tested, whereas infection by O11-3 and O11-0 produced mild symptoms in all plants (each of 20 plants tested) (Fig. 3a
, and data not shown). Accumulation levels of RNA3 in O11-3-infected plants differed among individual plants ranging from high to below detectable levels (Fig. 3c
, lanes 3 13). Even plants with relatively high levels of RNA3 accumulation showed mild symptoms (Fig. 3c
, lanes 3 and 8). Accumulation levels of viral RNA1 and RNA2 fluctuated slightly, but no correlation was found between amount and symptom severity (Fig. 3c
). Thus, BNYVV RNA4 is associated with symptom severity in N. benthamiana, whereas RNA3 is not implicated in these severe symptoms.
BNYVV p31 ORF is required for expression of severe symptoms in N. benthamiana
To determine whether the p31-coding region is responsible for symptom severity, each of the mutated RNA4 transcripts was mixed with O11-0 RNAs and inoculated into N. benthamiana seedlings. Plants infected with RNA4 mutant
Md1,
Md2,
Md3,
Cter,
ORF or CCG had mild symptoms, indistinguishable from those induced by O11-0, whereas plants infected with O11-0/wt or O11-4 had severe symptoms (Table 1
, Fig. 3a
). Northern blot analysis showed accumulation of wt and mutant RNAs of the expected sizes (Fig. 3d
). As observed in Fig. 3(c, d)
, accumulation levels of viral RNAs did not correlate with symptom severity on N. benthamiana plants. Thus, BNYVV p31 is required for expression of severe symptoms in N. benthamiana.
Analysis using transgenic plants encoding the p31 ORF sequence
To examine further the effect of the p31 ORF sequence on severe symptom expression in N. benthamiana, transgenic N. benthamiana plants expressing the p31 ORF sequence were produced by Agrobacterium-mediated transformation. A total of 24 transgenic lines (T1) were inoculated with O11-0 or O11-4 and subjected to Northern blot analysis. Levels of expression of transgene transcripts varied with transgenic lines (Fig. 4a
, only nine lines are shown). Some lines showed morphological abnormalities, which were not associated with levels of transgene transcripts. Almost all of the transgenic plants infected with O11-0 had mild symptoms similar to O11-0-infected non-transgenic plants. When inoculated with O11-4, many transgenic lines had severe symptoms similar to O11-4-infected non-transgenic plants, irrespective of expression levels of the transgene transcripts. However, some lines such as R4-7 with an undetectable level of transcripts (Fig. 4a
) showed mild symptoms, in which the plants did not contain wt RNA4, but some contained deleted RNA4 (Fig. 4b
). The failure of both the p31 transgene and full-length inoculated RNA4 to accumulate suggests that both the p31 transgene and the region of RNA4 containing p31 in the O11-4 inoculum were targeted by silencing. Silencing of the transgene in this R4-7 line was also confirmed by the methylation status of the transgene (data not shown). These results support the proposal that the p31 ORF sequence is involved in expression of severe symptoms on N. benthamiana.
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Md1 and
Cter, no obvious green fluorescence such as seen in O11-4-infected roots was observed (data not shown). In Northern blot analysis, GFP mRNA was abundant in roots infected with O11-4, whereas a lower level of GFP was detected in roots infected with O11-0 (Fig. 5d
BNYVV RNA2-encoded p14 protein is known to be a silencing suppressor and therefore we tested whether p31 affected expression of the p14 gene. Western blot analysis showed no difference in expression of the p14 protein or the coat protein between roots infected with O11-4 and O11-0 (Fig. 5e
). Taken together, our results indicate that BNYVV p31 does not suppress RNA silencing in the leaves of N. benthamiana, but that p31 enhances the ability of BNYVV to suppress RNA silencing of a transgene specifically in roots.
| DISCUSSION |
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In addition, we showed that BNYVV p31 is also involved in slight enhancement of symptom expression in Beta species and T. expansa (Table 1
). Interestingly, the presence or absence of wt RNA4 did not affect apparent viral RNA accumulation in roots, suggesting that p31 may not be involved in an increase in virus replication and cell-to-cell movement within roots. We also found that BNYVV p31 is associated with the production of severe mosaic symptoms in N. benthamiana. However, RNA3 had no such effect on symptom severity. In N. benthamiana plants, RNA3 was either eliminated during the initial infection process or disappeared spontaneously during virus propagation (Fig. 3b, c
). This is somewhat surprising given the fact that BNYVV p25 facilitates virus multiplication and is responsible for severe yellow local lesion symptoms in its natural host (Beta species) or in differential hosts such as T. expansa (Tamada et al., 1989
, 1999
; Jupin et al., 1992
). Thus, both p31 and p25 are involved in symptom development, but their effects are different and host specific.
Many viral proteins involved in the enhancement of viral pathogenicity are known to function as silencing suppressors (Brigneti et al., 1998
; Silhavy & Burgyán, 2004
; Li & Ding, 2006
). In the case of BNYVV, RNA2-encoded p14 protein has been shown to have a transgene silencing suppressor activity in a patch co-infiltration assay on N. benthamiana (Dunoyer et al., 2002
; Kondo et al., 2005
). In this study, we showed that expression of either p31 or p25 failed to suppress RNA silencing in the co-infiltrated leaves (Fig. 5
).
To test further whether BNYVV genes are involved in silencing suppression in roots, we employed a silencing suppression assay in which GFP-silenced N. benthamiana plants (16c) were inoculated with the virus (Voinnet et al., 1999
). Generally, in this assay, variation in the tissue specificity of different suppressors has been observed previously, ranging from suppression in all tissues of all infected leaves to suppression only in the veins of new emerging leaves (Voinnet et al., 1999
), but there has been no information as to how silencing suppressors are manifested in roots. Our results showed that, in BNYVV-infected plants, neither GFP fluorescence nor an increase in GFP mRNA level was observed in the shoots (or in the veins of new emerging leaves) (Fig. 5
). However, it was of particular interest to note that, in the presence of wt RNA4, obvious green fluorescence and an increase in GFP mRNA levels were observed in the roots, whereas BNYVV lacking wt RNA4 or carrying mutated RNA4 gave much weaker green fluorescence and reduced GFP mRNA accumulation (Fig. 5
, and data not shown). The observation that silencing suppression occurred in only new emerging roots when the virus arrived there suggests that p31 or the replication of RNA4 may prevent the establishment of silencing in the emerging roots. Taken together, our results indicate that wt RNA4 is able to contribute to silencing suppression of a transgene in the roots, but not in the leaves. This is the first evidence that a viral factor is involved in RNA silencing suppression in a root-specific fashion.
It has been shown that some plant viruses belonging to the family Closteroviridae encode more than one RNA silencing suppressor (Lu et al., 2004
; Kreuze et al., 2005
). In the case of sweet potato chlorotic stunt virus, one protein enhances silencing suppression activity of another protein (Kreuze et al., 2005
). The BNYVV p14 protein is able to suppress RNA silencing in leaves (Kondo et al., 2005
; H. Kondo, unpublished data) and, therefore, it could be hypothesized that RNA4 enhanced expression levels of the p14 protein in roots. However, this possibility can be ruled out because the presence of RNA4 did not influence either levels of p14 expression or viral RNA2 accumulation (Fig. 5d, e
). Another possibility is that p31 alone or in combination with other viral factor(s) enhances suppressor activities in roots. To test this idea, additional experiments will be required.
Another question arises as to how the silencing suppression activity of p31 is related to efficient transmissibility by P. betae. The RNA2-encoded p75 readthrough protein is known to be essential for vector transmission (Tamada et al., 1996
), whilst p31 has an indirect effect on vector transmission. There is no clear indication that p31 enhances levels of virus accumulation in root tissues, suggesting that the transmission inefficiency of the p31-defective virus is not due to impaired virus spread in host plants. Therefore, it is anticipated that p31 itself or its interaction with other viral factor(s) positively impacts a step(s) of BNYVV transmission, e.g. acquisition, retention or the inoculation process. Alternatively, p31 may augment virus replication as an enhancer of RNA silencing suppression at a particular infection stage of root cells and tissues where the zoospores of P. betae acquire the virus and thereby increase the chance of virus transmission by the vector. One may argue that enhanced virus accumulation should be observed in root cells infected by RNA4-carrying BNYVV. However, the fact that there was no clear augmentation of virus replication in roots may be attributed to saturating levels of virus replication in root cells with lower RNA silencing activities, irrespective of whether p31 is expressed.
| ACKNOWLEDGEMENTS |
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Received 16 November 2006;
accepted 7 January 2007.
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