|
|
||||||||
1 Department of Veterinary Pathology, University of Liverpool, Leahurst, Neston, Cheshire, UK
2 Department of Biological Sciences, University of Warwick, Coventry CV4 7AL, UK
Correspondence
Andrew J. Easton
a.j.easton{at}warwick.ac.uk
| ABSTRACT |
|---|
|
|
|---|
| INTRODUCTION |
|---|
|
|
|---|
AMPV type A field strain #8544 was isolated in northern England in 1985 during a severe outbreak of turkey rhinotracheitis that rapidly spread across the whole country. When tested as a candidate vaccine, it proved to be highly protective against virulent challenge, but also caused severe post-vaccine disease in a number of cases (Williams et al., 1991a
). Subsequently, strain #8544 was passaged extensively in Vero cells in our laboratory to yield an uncloned virus (named P20) that protected turkeys against virulent AMPV challenge (Williams et al., 1991b
). However, on occasions, the putative P20 vaccine produced respiratory disease, typical of AMPV infection, during serial passage in turkeys. This was ascribed to a small subpopulation of virulent virus in less than 1 in 105 infectious doses (Naylor & Jones, 1994
). To remove the virulent subpopulation, stock P20 was plaque purified and 12 derivative viruses were prepared as candidate vaccines and, as anticipated, all were shown to be free of the virulent subpopulation.
Here, we describe the protection conferred by these 12 plaque-purified viruses and demonstrate that the loss of ability to confer protection from virulent challenge is associated with an alteration in the balance of protein expression, particularly the attachment (G) glycoprotein.
| METHODS |
|---|
|
|
|---|
Clinical assessment of plaque-purified viruses.
An established challenge model was used to assess the ability of the plaque-purified viruses to confer protection from pathogenic virus challenge (Naylor et al., 1997a
; Williams et al., 1991a
). One-day-old turkey poults were divided into 13 groups, each comprising ten birds. Twelve groups received intraocular inoculations, each with a different virus (AM), at a dose of 103.0 TCID50 per poult. The final group was not inoculated. Clinical disease was assessed on a daily basis. At 3 weeks of age, half of the uninoculated control group was combined in one room, together with all of the birds from the inoculated groups and all were challenged by intraocular inoculation with virulent field virus strain #8544 at a dose of 103.0 ID50. This ensured that all birds receiving a virulent challenge were in identical conditions and received the same challenge. For each bird, the clinical signs were assessed prior to its identification by wing band number and then scored on a daily basis until signs ceased, using a four-point scoring system, with a score of 0 representing no signs, 1 representing clear nasal exudates, 2 representing turbid nasal exudates and 3 representing swollen infraorbital sinus and/or frothy eye (Catelli et al., 2006
). The disease severity for each group was expressed by summing the daily mean scores for the entire period of clinical disease to give a single cumulative score for each. It has been shown previously that turkeys with no protection typically achieve a score of between 8 and 10 on this scale, whereas fully protected birds score between 0 and 1. These scores have been shown to correlate closely with the level of virus replication in the trachea, which, together with the nasal turbinates, constitute the key tissues for replication of the virus (Naylor et al., 1997a
; Williams et al., 1991b
). At 3 weeks of age, prior to combining the groups, serum was collected from all birds prior to challenge to provide a baseline for AMPV serology by ELISA to confirm that virus had replicated and induced an antibody response.
Sequencing of viruses.
The complete genomic sequences of field virus strain #8544, vaccine P20, and two protective (C and K) and two non-protective (F and H) plaque-purified viruses were determined. RNA was extracted using an RNeasy kit (Qiagen) and cDNA was prepared as overlapping leader, central and trailer regions, using Superscript II reverse transcriptase (Invitrogen). The cDNAs were amplified with PfuTurbo (Stratagene) for 12 cycles and then amplified further to provide three overlapping PCR products for sequencing. The PCR products were treated with exonuclease I and shrimp alkaline phosphatase (GE Healthcare) to remove primers and dNTPs, respectively, and sequenced. If any region of sequence showed a difference to the other viruses, the process was repeated and the sequence difference confirmed using a new RNA extraction from the relevant virus followed by RT-PCR spanning the base(s) in question.
The remaining eight cloned vaccine viruses were sequenced in all regions where any differences were found between strain #8544, vaccine P20 and purified viruses C, F, H and K. This included the putative mutation together with a flanking sequence of about 250 bases in both directions. Subsequently, the G gene of purified virus L was fully sequenced after detection of additional mutations at the start of the G gene.
Western blotting of cloned viruses.
Protein expression of selected viruses was studied by Western blotting. Viruses F, K, G and L were grown in Vero cells and 107.5 TCID50 of each was purified by ultracentrifugation through a 25 % sucrose cushion followed by protein separation on 10 % SDS-PAGE gels. The proteins were electroblotted onto nitrocellulose and incubated with serum raised during natural infection of turkeys with strain #8544. As a control, a separate gel was silver stained to confirm that similar amounts of material were present in each sample (not shown). The bound antibodies were detected using horseradish peroxidase-conjugated secondary antibodies and diaminobenzidine as the substrate.
Generation of recombinant viruses.
Recombinant viruses, based on the subgroup A AMPV strain CVL-14/1, were created by reverse genetics. Full-length cDNA copies of the virus genome were prepared with modifications to the sequence to insert restriction enzyme recognition sites before the N gene initiation codon, in the L gene untranslated region and before the gene-start signals of the P, M, SH, G and L genes. The parental clone, designated F2, was modified by introducing the sequence of the SH gene-end and SHG intergenic region from protective C and unprotective F and H viruses. This was achieved by PCR amplification of the region from the intergenic M2SH to the intergenic region of the SHG genes including restriction sites enabling it to be inserted into F2 digested with the same enzymes. Virus was rescued from these plasmids in the T7 RNA polymerase-expressing cell line BSR-T7 (Buchholz et al., 1999
) following transfection with plasmids containing the full-length antigenome and the N, P, M2-1 and L genes in pCITE4 (Novagen). Virus was propagated in BS-C-1 cells and cells infected at the third passage were used for RNA extraction.
Measurement of SH, G and SHG readthrough mRNA levels.
RNA was extracted from BS-C-1 cells infected with viruses C and F or recombinant viruses using an RNeasy MIDI kit (Qiagen). RNA (1 µg per lane) was analysed by Northern blotting using glyoxal gels along with serial dilutions of in vitro transcripts [generated using Megascript T7 or T3 kits (Ambion) and purified on 5 % acrylamide/urea gels] corresponding to the SH or G genes to allow quantification of RNA levels. Blots were probed with antisense RNA probes generated with a Maxiscript kit (Ambion) directed against the SH or G genes and containing 5 % of a probe generated against the Millenium markers (Ambion), which were included on each gel. Hybridized and washed blots were wrapped in cling film and exposed to an imaging plate for reading in an FLA5000 imager (Fuji). Analysis of 16-bit TIFF files was carried out with TOTALLAB 2003 (nonlinear dynamics) and Microsoft EXCEL to give the number of copies of each specific RNA (µg total RNA)1.
Use of a dicistronic minigenome to measure the effects of different SH gene-end regions on a downstream reporter.
Overlap-extension PCR was used to alter the gene-end region of the first gene in a dicistronic minigenome, as described previously (Edworthy & Easton, 2005
), to that of strain #8544 or of virus C, F or H sequence. The sequences in the minigenome constructs contained the desired SH gene end and the subsequent intergenic region sequence of the appropriate virus (Fig. 1
). The minigenomes were rescued in a recombinant vaccinia T7 virus-based transfection system, and chloramphenicol acetyl transferase (CAT) and luciferase (Luc) reporter expression were measured as described previously (Edworthy & Easton, 2005
).
|
| RESULTS |
|---|
|
|
|---|
|
|
G (genomic sense) substitutions were found, which altered 29 amino acid residues of the protein. For some codons, more than one nucleotide was altered. The details and distribution of nucleotide sequences and altered amino acids is shown in Fig. 2
|
|
Total cellular RNA was prepared from virus-infected cells, separated by electrophoresis, blotted and probed. The results of samples probed with plus-strand-specific SH and G gene probes are shown in Fig. 4(a, b)
. The SH gene probe showed that the wild-type (F2, equivalent to #8544) and protective virus SH gene ends (Fig. 4b
, tracks C and rC) allowed only negligible readthrough into the G gene, as shown in Table 3
. In contrast, a significant level of SHG gene readthrough mRNA was seen for all non-protective vaccine SH gene ends (Fig. 4a, b
, tracks F, rF and rH). The ratios of G gene transcripts to SH gene transcripts (SH+dicistronic SHG), as calculated from G- and SH-probed blots, are shown in Table 3
. In general, the relative amount of G gene transcribed was lower in the non-protective viruses, but only to a marked degree for rF.
|
|
The levels of expression of CAT protein (measured by ELISA) and Luc (in arbitrary units) were expressed as a ratio (Luc/CAT) for each minigenome. In Table 3
and Fig. 4(c)
, each ratio is given as a percentage of the ratio of the wild-type #8544 virus (which gave the highest ratio). This approach provided a relative measure of expression of the second gene compared with the first gene for the various sequences. The level of expression of the luc gene in protective virus C was almost identical to that of the parental virus. However, for the sequences from the two non-protective viruses, the level of expression of the luc gene was significantly reduced compared with the protective viruses, with the sequence from virus F causing the most reduction (43 % of the control). This demonstrated that the alteration in the SH gene-end sequence that altered the level of readthrough mRNA at the SHG gene junction also reduced the level of expression of the downstream gene. This was in agreement with the reduction in the level of G protein seen in the Western blots of the virus proteins (Fig. 3
).
| DISCUSSION |
|---|
|
|
|---|
The complete genomic sequences of the parental pathogenic strain #8544 and the P20 vaccine derived from it were determined to locate the mutations associated with the loss of pathogenicity and the inability to protect from infection. This indicated that there were only nine nucleotide changes between the two viruses, only three of which resulted in amino acid changes, two in the F protein and one in the M2-1 protein, whilst of the remainder, four were silent mutations and two occurred in a non-coding region.
The complete genome sequences of two protective viruses, C and K, and two non-protective viruses, F and H, were determined. The protective viruses were identical in sequence to the P20 consensus sequence. In contrast, the non-protective viruses, F and H, both contained a single mutation, not present in the protective viruses, in the transcription termination signal of the SH gene (Fig. 1
). The mRNA profile of the parental and selected plaque-purified viruses showed that the level of transcriptional readthrough at the SHG gene junction in the non-protective viruses was considerably greater than that seen for protective viruses. In addition, a similar alteration in the frequency of SHG readthrough was seen in recombinant viruses engineered to contain the altered SH gene-end sequence (Fig. 4a
; Table 3
). When the levels of gene expression for a series of dicistronic minigenomes containing SH gene-end sequences from either the protective or non-protective viruses was assessed, the level of protein expression from the downstream gene was significantly reduced compared with the control (Fig. 4c
), indicating that the alteration in transcriptional readthrough led to a reduction in gene expression of the downstream gene, which was that for the G protein in the virus genome (Fig. 4b
; Table 3
).
A Western blot of the P20 vaccine and the four plaque-purified viruses using polyclonal antiserum raised during infection of turkeys by a natural route under experimental conditions showed antibody responses primarily to the F protein, irrespective of whether the viruses were protective or not (Fig. 3
). Assuming that there were similar responses in the inoculated birds, this indicates that, for AMPV, an antibody response to the F protein alone is not sufficient to protect birds from challenge. The detection of high levels of antibodies directed against the F protein after infection by a natural route is in contrast to the antibody profile seen for other similar viruses in mammals. However, the immune systems of mammals and birds are significantly different. It should be borne in mind that a previous study showed that virus stock P20 fully protected bursectomized turkeys where antibody was undetectable (Jones et al., 1992
). Equally, turkeys with high levels of circulatory antibody can be unprotected (Naylor et al., 1997b
). This implies that viruses that do not protect are likely to have lost T-cell rather than B-cell epitopes. It is possible that the non-protective viruses may not be expressing sufficient levels of key T-cell epitopes on the G protein gene.
Whilst Western blotting of the proteins from selected protective and non-protective viruses only showed a weak diffuse band in the region corresponding to the reported size for the G protein, this was noticeably reduced in blots of non-protective viruses (Fig. 3
). Taken together, these data strongly suggest that an alteration in the balance of level of expression of virus proteins, in particular a reduction in the relative level of the G protein, can significantly reduce the potential protective efficacy of a vaccine candidate.
Alterations of transcription termination signals have been shown to have an effect on transcriptional readthrough, but did not result in any significant difference in the ability of the altered viruses to replicate in vitro or in vivo (Tran et al., 2004
). An A
G substitution (genomic sense) at position 5937 (strain #8544 numbering) in the SH gene end inadvertently introduced into a recombinant AMPV has been shown to produce increased readthrough at the SHG gene junction and reduced expression of G mRNA (R. Ling and A. J. Easton, unpublished data).
The conservation of strain #8544 sequences in plaque-purified virus L at positions 2941 and 11624 might lead to the expectation that it would be more virulent and more protective than the other clones. However, the G protein gene in virus L also contained extensive mutations, which may have resulted in the reduced level of protection to challenge as well as the absence of virulence (Fig. 2
). The predicted protein sequence of the G protein of virus L contained more potential O-linked glycosylation sites than was the case for the G protein of the other plaque-purified viruses. The additional potential glycosylation sites were at positions 109 (I
T), 130 (L
S), 170 (I
T) and 217 (M
T), whilst two were lost at positions 45 (T
I) and 160 (S
P; Fig. 2
). The origin of the G gene mutations in virus L is unclear, but it may have been present as a subpopulation in the original strain #8544 isolate or have been generated some time later during passage in tissue culture. A possible explanation for the A
G transitions in the genomes of negative-strand RNA viruses involving cellular adenine deaminase enzymes has been described (Bass et al., 1989
).
Reduction of G gene expression or sequence variations in it therefore appear to reduce protection afforded by potential vaccine viruses. The importance of the G protein in generating a fully protective response has been demonstrated in respiratory syncytial virus using a recombinant virus in which the G gene was deleted (Johnson et al., 2004
). However, this contrasts with the data from human metapneumovirus (HMPV) where a virus lacking the G gene was shown to confer effective protection to African Green monkeys in challenge trials (Biacchesi et al., 2005
). The reasons for the differences seen with HMPV are not clear, and it is possible that this reflects differences in the host species or in the challenge protocols in the different systems. In the current study, it was possible that the reduction in protection observed in protective viruses was due in part to a reduction in replication rates of non-protective viruses. Serology indicated that replication occurred, but this may not be a measure of the relative levels of in vivo replication when comparing protective and non-protective viruses.
The data presented here clearly show that the features required in an effective vaccine the ability to replicate in the host without causing disease and the ability to confer protection from subsequent infection are quite different. Also, the factors that determine whether a vaccine candidate can confer protection from disease can be very subtle and can be affected by as little as a single point mutation. The data also show that a critical factor for AMPV in determining the ability to confer protection is the balance in levels of G protein expression compared with other virus proteins, even when the other major antigen, the F protein, is expressed at effective levels. It will be of interest to explore further the potential effects of altering the balance of other virus proteins to determine whether this is a G protein-specific effect or whether it applies more generally to the overall balance of virus protein expression.
| ACKNOWLEDGEMENTS |
|---|
| REFERENCES |
|---|
|
|
|---|
Biacchesi, S., Pham, Q. N., Skiadopoulos, M. H., Murphy, B. R., Collins, P. L. & Buchholz, U. J. (2005). Infection of nonhuman primates with recombinant human metapneumovirus lacking the SH, G, or M2-2 protein categorizes each as a nonessential accessory protein and identifies vaccine candidates. J Virol 79, 1260812613.
Buchholz, U. J., Finke, S. & Conzelmann, K. K. (1999). Generation of bovine respiratory syncytial virus (BRSV) from cDNA: BRSV NS2 is not essential for virus replication in tissue culture, and the human RSV leader region acts as a functional BRSV genome promoter. J Virol 73, 251259.
Catelli, E., Cecchinato, M., Savage, C. E., Jones, R. C. & Naylor, C. J. (2006). Demonstration of loss of attenuation and extended field persistence of a live avian metapneumovirus vaccine. Vaccine 24, 64766482.[CrossRef][Medline]
Cavanagh, D. & Barrett, T. (1988). Pneumovirus-like characteristics of the mRNA and proteins of turkey rhinotracheitis virus. Virus Res 11, 241256.[CrossRef][Medline]
Collins, M. S. & Gough, R. E. (1988). Characterization of a virus associated with turkey rhinotracheitis. J Gen Virol 69, 909916.
Edworthy, N. L. & Easton, A. J. (2005). Mutational analysis of the avian pneumovirus conserved transcriptional gene start sequence identifying critical residues. J Gen Virol 86, 33433347.
Johnson, T. R., Teng, M. N., Collins, P. L. & Graham, B. S. (2004). Respiratory syncytial virus (RSV) G glycoprotein is not necessary for vaccine-enhanced disease induced by immunization with formalin-inactivated RSV. J Virol 78, 60246032.
Jones, R. C. (1996). Avian pneumovirus infection: questions still unanswered. Avian Pathol 25, 639648.[CrossRef][Medline]
Jones, R. C., Naylor, C. J., al-Afaleq, A., Worthington, K. J. & Jones, R. (1992). Effect of cyclophosphamide immunosuppression on the immunity of turkeys to viral rhinotracheitis. Res Vet Sci 53, 3841.[Medline]
Ling, R. & Pringle, C. R. (1988). Turkey rhinotracheitis virus: in vivo and in vitro polypeptide synthesis. J Gen Virol 69, 917923.
Ling, R., Easton, A. J. & Pringle, C. R. (1992). Sequence analysis of the 22K, SH and G genes of turkey rhinotracheitis virus and their intergenic regions reveals a gene order different from that of other pneumoviruses. J Gen Virol 73, 17091715.
Naylor, C. J. & Jones, R. C. (1994). Demonstration of a virulent subpopulation in a prototype live attenuated turkey rhinotracheitis vaccine. Vaccine 12, 12251230.[CrossRef][Medline]
Naylor, C., Shaw, K., Britton, P. & Cavanagh, D. (1997a). Appearance of type B avian pneumovirus in Great Britain. Avian Pathol 26, 327338.[CrossRef][Medline]
Naylor, C. J., Worthington, K. J. & Jones, R. C. (1997b). Failure of maternal antibodies to protect young turkey poults against challenge with turkey rhinotracheitis virus. Avian Dis 41, 968971.[CrossRef][Medline]
Naylor, C. J., Brown, P. A., Edworthy, N., Ling, R., Jones, R. C., Savage, C. E. & Easton, A. J. (2004). Development of a reverse-genetics system for Avian pneumovirus demonstrates that the small hydrophobic (SH) and attachment (G) genes are not essential for virus viability. J Gen Virol 85, 32193227.
Randhawa, J. S., Wilson, S. D., Tolley, K. P., Cavanagh, D., Pringle, C. R. & Easton, A. J. (1996). Nucleotide sequence of the gene encoding the viral polymerase of avian pneumovirus. J Gen Virol 77, 30473051.
Randhawa, J. S., Marriott, A. C., Pringle, C. R. & Easton, A. J. (1997). Rescue of synthetic minireplicons establishes the absence of the NS1 and NS2 genes from avian pneumovirus. J Virol 71, 98499854.
Tran, K. C., Collins, P. L. & Teng, M. N. (2004). Effects of altering the transcription termination signals of respiratory syncytial virus on viral gene expression and growth in vitro and in vivo. J Virol 78, 692699.
van den Hoogen, B. G., Bestebroer, T. M., Osterhaus, A. D. & Fouchier, R. A. (2002). Analysis of the genomic sequence of a human metapneumovirus. Virology 295, 119132.[CrossRef][Medline]
Williams, R. A., Savage, C. E. & Jones, R. C. (1991a). Development of a live attenuated vaccine against turkey rhinotracheitis. Avian Pathol 20, 4555.[Medline]
Williams, R. A., Savage, C. E., Worthington, K. J. & Jones, R. C. (1991b). Further studies on the development of a live attenuated vaccine against turkey rhinotracheitis. Avian Pathol 20, 585596.[Medline]
Yu, Q., Davis, P. J., Brown, T. D. & Cavanagh, D. (1992a). Sequence and in vitro expression of the M2 gene of turkey rhinotracheitis pneumovirus. J Gen Virol 73, 13551363.
Yu, Q., Davis, P. J., Li, J. & Cavanagh, D. (1992b). Cloning and sequencing of the matrix protein (M) gene of turkey rhinotracheitis virus reveal a gene order different from that of respiratory syncytial virus. Virology 186, 426434.[CrossRef][Medline]
Received 4 December 2006;
accepted 23 February 2007.
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
| INT J SYST EVOL MICROBIOL | MICROBIOLOGY | J GEN VIROL |
| J MED MICROBIOL | ALL SGM JOURNALS | |