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MRC Virology Unit, Institute of Virology, Church Street, Glasgow G11 5JR, UK
Correspondence
John McLauchlan
j.mclauchlan{at}mrcvu.gla.ac.uk
| ABSTRACT |
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A supplementary figure is available with the online version of this paper.
| INTRODUCTION |
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The mature form of core is a dimeric,
-helical protein that is separable into two domains, D1 and D2 (McLauchlan, 2000
; Boulant et al., 2005
, 2006
). D1 consists of the N-terminal 117 aa, while D2 begins at amino acid residue 118 and ends between amino acids 171 and 182. D2 is required for correct folding of D1 and is critical for the association of core with membranes (Boulant et al., 2005
, 2006
). We have identified two amphipathic
-helices (HI and HII) separated by a short hydrophobic loop (HL) as the major structural features in D2 (Boulant et al., 2006
). HI and HII are positioned between amino acids 119 and 136, and 148 and 164, respectively. Folding of HI and HII requires a hydrophobic environment with both helices probably lying in-plane with membranous surfaces (Boulant et al., 2006
).
Following maturation by SP and SPP, core associates with lipid droplets (LDs) (Moradpour et al., 1996
; Barba et al., 1997
; McLauchlan et al., 2002
). LDs store intracellular neutral lipid (Murphy, 2001
; Martin & Parton, 2005
) and are composed of a hydrophobic core of triacylglycerol and cholesterol ester, which is encircled by a single leaflet of phospholipids that in turn is surrounded by a proteinaceous layer. D2 is able to target not only core but also heterologous proteins to LDs (Hope & McLauchlan, 2000
; Boulant et al., 2006
); the critical residues required for LD association lie on the hydrophobic faces of HI and HII and within HL.
Association of core with LDs occurs in HCV-infected hepatocytes in chimpanzees and in a wide variety of cell types, including hepatocyte-derived cell lines (Moradpour et al., 1996
; Barba et al., 1997
; McLauchlan et al., 2002
; Sato et al., 2006
). Until recently, propagation of HCV in tissue culture cell lines was not possible. However, production of infectious virus in human hepatoma cells has now been achieved with JFH1, a Japanese genotype 2a strain (Lindenbach et al., 2005
; Wakita et al., 2005
; Zhong et al., 2005
). In cells either producing or infected with JFH1, core is found attached to LDs (Rouille et al., 2006
). In this report, we have analysed the timing of LD association by HCV core produced by JFH1 and studied the impact of mutations introduced into its D2 domain. We have examined the effect of these changes on the attachment of core to LDs and release of infectious progeny to determine whether impairing the coreLD interaction reduces HCV production.
| METHODS |
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Maintenance of tissue culture cells and treatment with MG132.
HuH-7 cells were propagated in Dulbecco's modified Eagle's medium (DMEM) and treated with MG132 as described previously (McLauchlan et al., 2002
).
Antibodies.
Antibodies used to detect HCV core (rabbit antisera R308), NS5A and human adipocyte differentiation-related protein (ADRP) have been described previously (Hope & McLauchlan, 2000
; Macdonald et al., 2003
; Targett-Adams et al., 2003
). Rabbit antiserum against calnexin (Sigma) was used according to the manufacturer's instructions.
In vitro transcription and electroporation of JFH1 RNA.
Wild-type (wt) and mutant pJFH1 constructs were linearized by XbaI digestion and treated with Mung Bean Nuclease (New England BioLabs). RNA was synthesized in vitro from linearized plasmids using the MEGAscript high yield transcription kit according to manufacturer's instructions (Ambion). Electroporation of RNA into HuH-7 cells was performed as described previously (Hope & McLauchlan, 2000
; McLauchlan et al., 2002
).
Infection of cells with HCV.
Unless otherwise stated, HuH-7 cells were electroporated with either wt or mutant JFH1 RNA for 3 days. Virus released into the growth medium at this time point was used to infect monolayers of naïve HuH-7 cells on coverslips. Prior to infection, medium containing supernatant virus was filtered using a 0.2 µm Minisart filter (Sartorius) and diluted with fresh DMEM. Infected cells were detected at 3 days post-inoculation by indirect immunofluorescence using core and NS5A antibodies. Virus titres were determined by counting numbers of fluorescent foci on each coverslip (Wakita et al., 2005
).
Preparation of cell extracts, PAGE and Western blot analysis.
Preparation of cell extracts, PAGE and Western blot analysis were performed as described in Boulant et al. (2006)
.
Separation of intracellular organelles on sucrose gradients.
HuH-7 cells were electroporated with recombinant JFH1 RNA and used to seed 100 mm tissue culture dishes. After incubation for 3 days at 37 °C, cells were fractionated as follows at 4 °C. Cell monolayers were washed 34 times with PBS and once with homogenization buffer (HB; 20 mM HEPES-KOH, pH 7.4, 1 mM EDTA, 0.25 M sucrose, 1 mM PMSF). Cells were scraped into 600 µl HB and homogenized by passage through a 22-gauge needle. The homogenate was centrifuged at 500 g for 5 min and the supernatant was collected as a post-nuclear supernatant (PNS). For flotation gradient centrifugation, the PNS was adjusted to 2 ml with HB containing 1.2 M sucrose and applied above a 1.6 M sucrose cushion (2 ml) in a 14x89 mm centrifuge tube. The PNS was overlaid with 2 ml each of 1, 0.75, 0.5 and 0.25 M sucrose solutions prepared in HB. Gradients were centrifuged in a SW41Ti rotor at 100 000 g for 16 h at 4 °C. After centrifugation, fractions were collected, and proteins were precipitated with trichloroacetic acid [15 % (v/v)] and acetone [35 % (v/v)]. Pellets were resuspended in sample buffer.
Indirect immunofluorescence.
Cells were fixed for 20 min in methanol at 20 °C. Methanol was the preferred fixative as both core and ADRP were difficult to detect following paraformaldehyde fixation (data not shown). After washing with PBS and blocking with PBS/CS (PBS containing 1 % new-born calf serum), cells were incubated with primary antibody (diluted in PBS/CS) for 2 h at room temperature. Cells were washed extensively with PBS/CS and then incubated with secondary antibody (either anti-rabbit or anti-sheep IgG) conjugated to a fluorescent tag for 2 h at room temperature. After washing with PBS/CS and PBS, cells were rinsed with dH2O before mounting on slides using Citifluor (Citifluor).
Microscopy.
Cells were examined with an LSM510 META inverted confocal microscope. Images were recorded with a Plan-Apochromat x63 lens (NA 1.4). For Z-stack analysis, 25 images were recorded at 0.14 µm intervals. For Fig. 5
, analysis of the extent of colocalization was performed by LSM510 software. For the three-dimensional (3D) reconstructions in Fig. 6
, Z-stack images were collected using optimum intervals, generating 2025 slices per sample. Image stacks were deconvolved by 3D-blind deconvolution (20 iterations) using Autodeblur software (MediaCybernetics). 3D reconstructions were created with the five-dimensional-viewer extension in the iso-surface mode using a bin factor of 1.
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| RESULTS |
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Core and NS5A displayed a spotty pattern in infected and electroporated cells, but there was little evidence of colocalization of the two proteins (Fig. 1a
). To determine whether the distribution of core indicated association with LDs, cells were also probed with an antibody against ADRP, the most abundant cellular component on the LD surface in HuH-7 cells (Fujimoto et al., 2004
). This analysis revealed precise coincidence of core and ADRP, demonstrating that the viral protein attached to LDs in cells either electroporated with JFH1 RNA or infected with JFH1 virus (Fig. 1b
and data not shown). Further evidence for the LD association of core was obtained from biochemical fractionation of cells electroporated with JFH1 RNA (Fig. 1c
). In sucrose gradients, a large proportion of the viral protein was found in fractions that contained ADRP (Fig. 1c
, fractions 24). In addition, core co-migrated with calnexin (Fig. 1c
, fractions 712), indicating that it was also present on the ER membrane, in agreement with previous biochemical fractionation studies (Schwer et al., 2004
; Suzuki et al., 2005
).
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Location of punctate sites on LDs
Observations from a large number of cells expressing wt core at 24 h and for JFH1DP core, either treated or not treated with oleic acid (Supplementary Fig. S1 available in JGV Online), highlighted that the protein was apparently located only at a single punctate site on each LD (Fig. 4c
, arrows). To determine the relative locations of core and ADRP more accurately we performed optical sectioning of cells to generate Z-stacks in which sequential images could be analysed for coincidence of the two proteins in 3D. Examining images in x-y, x-z and y-z planes demonstrated precise colocalization between wt core and ADRP at 48 h (Fig. 5
). By contrast, only partial overlap was evident between JFH1DP core and ADRP in the x-y plane and almost no colocalization in either the x-z or y-z planes (Fig. 5
). These data suggested that JFH1DP core was located at a site that did not include ADRP but was in close proximity to the cellular protein. Identical results were obtained from analysis of wt core at 24 h after RNA electroporation (data not shown). To reconstruct the relative positions of ADRP and core located at punctate sites, Z-stacks were rendered for cells expressing wt and DP core at different times after electroporation to give a 3D representation of LDs (Fig. 6
). This approach highlighted close juxtaposition of core to the surface of LDs and that the protein was present at a single site on the organelles at 24 h post-electroporation for wt core and at all time points for DP core (Fig. 6a, b
). The extent of coating of core on the surface of LDs was greater at 48 h and almost complete by 72 h post-electroporation (Fig. 6a
).
| DISCUSSION |
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Apart from LDs, core has been found located at the ER membrane, in mitochondria and in cell nuclei (Moradpour et al., 1996
; Yasui et al., 1998
; Okuda et al., 2002
; Schwer et al., 2004
). Such diverse reports pose questions regarding the relevance of systems that study the protein's properties in the absence of virus production. From a recent report using the JFH1 isolate, core was attached to LDs by 72 h in cells electroporated with infectious RNA and in virus-infected cells (Rouille et al., 2006
). Core was also detected at sites proposed to be a membranous compartment associated with LDs. However, any time-dependent relationship between the two distributions for core was not studied. By examining cells from early to late stages after electroporation and infection, we found that core was located initially at a single punctate site on each LD by 12 h and then it progressively surrounded the entire organelle from this time onwards. This time dependence for core to fully envelope LDs was also apparent upon induction of excess amounts of LDs (Supplementary Fig. S1 available in JGV Online). Hence, it is improbable that the punctate distribution of core results from limited availability of accessible sites on LDs. Rather, the coating of LDs by core is more likely to start from one position on LDs that is defined by a unique punctate site and then continues as a progressive process as the abundance of the protein increases. We consider that the two patterns of distribution described by Rouille et al. (2006)
probably reflect cells expressing core at later times after infection or electroporation (when the protein is attached to LDs) and cells infected during the course of the experiment that have produced the protein for a shorter period (when core is located at punctate sites). Thus, our data are compatible with those of Rouille et al. (2006)
and establish a time-dependent relationship between the two patterns of core distribution that these authors have described.
Mature core is generated at the ER membrane by SP and SPP and only fully processed protein is detected at the time core is located at punctate sites. Therefore, this distribution is apparently not a consequence of delayed protein maturation. We propose that the punctate sites may represent an intermediate location after processing where core is transferred between the ER membrane and LDs, and could indicate connections between the two organelles for loading of proteins onto LDs. Such a mechanism has been proposed for the transfer of ADRP from the ER membrane to LDs during their biogenesis (Robenek et al., 2005
, 2006
). Moreover, recent evidence has demonstrated that Rab18, one of the Rab family of small GTPases, is found not only on the entire surface of droplets but also at punctate sites on LDs (Ozeki et al., 2005
; Martin et al., 2005
). Higher resolution analysis suggested that in cells overexpressing Rab18, LDs were juxtaposed to the ER membrane, which may indicate specific sites where LDs gain their proteins. Studies are in progress to determine whether any relationship exists between the punctate sites for Rab18 and those for HCV core.
Previously, we described the structural features contained within domain D2 for the core protein encoded by HCV strain Glasgow (Boulant et al., 2006
). Our studies identified two amphipathic helices (HI and HII) separated by an HL. It was considered likely that the hydrophobic amino acids on both helices and those in HL formed a contiguous stretch of residues, which interacted in-plane with the membranous surface of LDs. In the absence of any available infectious system at that time, the properties of the residues in the structural elements of D2 were analysed by mutagenesis and transient expression using an SFV vector. Among the mutants that were characterized, alteration of the phenylalanine residue at position 130 not only abolished LD association but also generated an unstable form of core. By contrast, mutation of a cysteine residue at position 128 had no effect on either LD attachment or stability of the protein. Both Phe-130 and Cys-128 are highly conserved in all HCV strains, including JFH1. Since the introduction of these mutations into infectious JFH1 gave core proteins with characteristics identical to those studied with the SFV vector system, our current studies strongly support the hypothesis that hydrophobic residues in D2, which are critical for membrane association, also play a crucial role in maintaining the stability of the protein. Recently, it has been demonstrated that the abundance of core protein can be modulated through ubiquitinylation by the E3 ligase, E6AP (Shirakura et al., 2007
). These modulatory effects also influence levels of infectious virus progeny. Together with our findings on the instability of the Phe-130 mutant protein, we postulate that E6AP may have a role in degradation of core species, which are defective in either folding or membrane association, to prevent their incorporation into virus particles.
To examine directly whether there was a connection between LD association by core and virus production, it was necessary to examine a mutant that was more stable but did not associate with LDs. Hence a third mutant was created, termed JFH1DP, in which two prolines were converted to alanines within HL. These residues have been suggested to correspond to the proline-knot motif, which is flanked by two
-helices in the LD-binding domain of the plant protein, oleosin (Lacey et al., 1998
; Alexander et al., 2002
; Hope et al., 2002
). The
-helices in oleosin could correspond to the amphipathic HI and HII helices in D2. In a previous study, these mutations in HCV core from strain Glasgow prevented LD association and reduced processing efficiency by SPP, but the mutant protein was relatively stable in contrast to the Phe-130 mutant (Hope et al., 2002
; Boulant et al., 2006
). At early times of expression, JFH1DP core was detected as a doublet, which we presumed to correspond to SPP- and SP-cleaved forms of the protein. With longer periods of expression (48 h), only the SPP-cleaved form was detected in the JFH1 system. Maturation of core is a coordinated event in which SP cleaves initially and is then followed by SPP proteolysis (Lemberg & Martoglio, 2002
). In our studies, there was no evidence for a coreE1 precursor, which would result from inefficient SP cleavage. Hence, we consider it likely that there was a delay only in SPP proteolysis for this mutant in JFH1. The mechanism for any delay in SPP cleavage is not known, but, conceivably the two prolines might introduce turns into the polypeptide backbone that facilitate correct folding or membrane integration for core. Perturbing these characteristics of the protein may be transmitted to the signal peptide between core and E1 and thereby reduce the ability of SPP to recognize the signal peptide as a substrate for cleavage. Other mutations in HL are also associated with inefficient SPP proteolysis but have no effect on SP cleavage (Okamoto et al., 2004
). Therefore, our results verify the contribution from other parts of core for optimal SPP proteolysis in addition to those located in the signal peptide region (McLauchlan et al., 2002
; Hope et al., 2006
).
Mutation of the prolines at positions 138 and 143 to alanine also reduced the abundance of core and NS5A, particularly at early times after RNA electroporation. We failed to recover increased amounts of the viral proteins by incubation of cells with the proteasome inhibitor MG132 (data not shown). Moreover, the number of cells expressing core and NS5A was about 10 % lower for JFH1DP as compared with wt JFH1 (50 % for wt JFH1 compared with 40 % for JFH1DP; data not shown) at 24 h after electroporation, which only partially accounts for the lower abundance of the viral proteins synthesized by JFH1DP. Therefore, the mechanism for reduced abundance of core and NS5A expressed by JFH1DP at early time points is not apparent, although increased time for membrane integration due to protein misfolding could lower translational efficiency as well as SPP cleavage. Further studies are in progress to address this question.
Two pieces of evidence in our studies suggest a link between the association of core with LDs and virus production. Firstly, the change in distribution of wt core from sites juxtaposed to LDs at early times to complete envelopment of the organelles at later times coincided with a sharp rise in the production of infectious virus. Secondly, JFH1DP, which did not give rise to virus progeny, expressed a core protein that was targeted to punctate sites indistinguishable from those identified for the wt protein at early times but JFH1DP core did not proceed to coat LDs. We consider it likely that the punctate distribution for core triggered by these mutations corresponds to accumulation at the transfer site between the ER membrane and LDs. However, the protein is apparently blocked at such sites and not capable of completing the transfer to coat the LD surface, probably as a result of misfolding. Our data do not demonstrate formally that core present in virions was derived from a pool of protein attached to LDs and it is possible that the ability of core to associate with LDs is merely an indicator of the potential for the protein to promote virion assembly. Nevertheless, our results are consistent with the notion that core protein attached to LDs could be incorporated into virions. Such a pathway requires both association and disassociation of the protein from droplets to enable virus assembly, which is presumed to occur at the ER membrane. In the case of the JFH1DP mutant, core may be trapped at the transfer site between the ER membrane and LDs, preventing its delivery to sites of virion assembly. Since wt core is able to transfer from the ER membrane to the surface of LDs, we propose that the reverse process can also occur and experiments are in progress to determine the mobility of the protein on both organelles. Such studies on the trafficking of core should provide greater insight into the relationship between LDs and HCV assembly.
| ACKNOWLEDGEMENTS |
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Received 2 February 2007;
accepted 19 April 2007.
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P. Targett-Adams, S. Boulant, and J. McLauchlan Visualization of Double-Stranded RNA in Cells Supporting Hepatitis C Virus RNA Replication J. Virol., March 1, 2008; 82(5): 2182 - 2195. [Abstract] [Full Text] [PDF] |
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A. Shavinskaya, S. Boulant, F. Penin, J. McLauchlan, and R. Bartenschlager The Lipid Droplet Binding Domain of Hepatitis C Virus Core Protein Is a Major Determinant for Efficient Virus Assembly J. Biol. Chem., December 21, 2007; 282(51): 37158 - 37169. [Abstract] [Full Text] [PDF] |
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