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Department of Virology II, National Institute of Infectious Diseases, 4-7-1 Gakuen, Musashimurayama-shi, Tokyo 208-0011, Japan
Correspondence
Minetaro Arita
minetaro{at}nih.go.jp
| ABSTRACT |
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inhibitor) have anti-EV71 activity, and that GW5074 (3-(3, 5-dibromo-4-hydroxybenzylidine-5-iodo-1,3-dihydro-indol-2-one)) (a Raf-1 inhibitor) has both anti-PV and anti-EV71 activities. EV71 mutants resistant to metrifudil, N6-benzyladenosine and NF449 were isolated after passages in the presence of these compounds, but mutants resistant to GW5074 were not isolated for both PV and EV71. The inhibitory effect of GW5074 was not observed in Sendai virus infection and the treatment did not induce the expression of OAS1 and STAT1 mRNA. Small interfering RNA treatment against putative cellular targets of GW5074, including Raf-1, B-Raf, Pim-1, -2, and -3, HIPK2, GAK, MST2 and ATF-3, did not consistently suppress PV replication. Moreover, downregulation of Raf-1 and B-Raf did not affect the sensitivity of RD cells to the inhibitory effect of GW5074. These results suggest that GW5074 has strong and selective inhibitory effect against the replication of PV and EV71 by inhibiting conserved targets in the infection independently of the interferon response. A supplementary table showing the siRNA duplex used in this study is available with the online version of this paper.
| INTRODUCTION |
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The viral replication machinery of PV requires numerous cellular factors to hijack the cellular process. For viral protein synthesis, recruitment of ribosome to the internal ribosomal entry site (IRES) on the viral genome requires host factors polypyrimidine tract-binding protein (PTB), Unr, La, poly(rC)-binding protein 2 (PCBP2) and SRp20 that are not required for cap-dependent protein synthesis of cellular mRNA (Bedard et al., 2007
; Hellen et al., 1993
; Hunt et al., 1999
; Meerovitch et al., 1993
; Sanford et al., 2004
; Walter et al., 1999
), along with proteolytic modification of a translation initiation factor eIF4G by viral proteinase 2Apro to hijack the translation machinery from cap-dependent protein synthesis to viral protein synthesis (Gradi et al., 1998
; Krausslich et al., 1987
). For the replication process, membrane rearrangement utilizing ADP ribosylation factors (Arfs) and guanine nucleotide exchange factors (GEFs) (GBF1, BIG1/2) are required via direct and indirect interaction with viral 3A and 3CD proteins in coxsackievirus B3 (CVB3) and PV infections (Belov et al., 2007
; Wessels et al., 2006
). Cellular signalling via extracellular signal-regulated kinase (ERK), phosphatidylinositol 3-kinase (PI3K) and stress-activated protein kinases (SAPKs) affected replication and/or the release of progeny virus in CVB3 infection by an unknown mechanism (Esfandiarei et al., 2004
; Luo et al., 2002
; Si et al., 2005
).
These cellular processes are promising targets for the development of effective anti-PV drugs. PV mutants resistant to anti-PV inhibitors or anti-PV antibodies could emerge rapidly, because a mutant exists in a population of virus (103 to 105), if a single mutation was sufficient for resistance (Blondel et al., 1986
; Crotty et al., 2001; de la Torre et al., 1992
; Diamond et al., 1985
; Pincus et al., 1986
, 1987
). Actually, PV isolates from an immunodeficient case chronically infected with PV showed resistance to pleconaril, which is an anti-PV drug that targets the viral capsid proteins to prevent uncoating (Abdel-Rahman & Kearns, 1998
), despite the absence of pleconaril treatment (MacLennan et al., 2004
). In contrast, emergence of virus mutant resistant to inhibitors against cellular factors was limited, depending in part on the capacity of viral protein activities in the target step. A PV mutant resistant to brefeldin A, which blocks membrane traffic between the cis- and trans-Golgi compartments and inhibits PV replication (Irurzun et al., 1992
; Maynell et al., 1992
), required two mutations and was isolated after five passages under a stepwise selection pressure by raising the concentration of the inhibitor (Crotty et al., 2004
). The emergence of a PV mutant resistant to geldanamycin treatment, which targets Hsp90 and interferes with the folding of PV capsid probably in cooperation with Hsp70 (Macejak & Sarnow, 1992
), was not observed (Geller et al., 2007
).
In this study, we performed drug screening by utilizing a pharmacologically active compound library with partially characterized targets and pseudoviruses, which have PV and EV71 replicons encoding firefly luciferase as a replication marker encapsidated in the PV and EV71 capsid proteins, respectively (Arita et al., 2006
, 2008
, Porter et al., 1998
). We have identified four compounds and characterized their inhibitory effects on PV and EV71 infection.
| METHODS |
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Virus titration.
The virus titre was determined by measuring 50 % cell culture infectious dose (CCID50) in a microtitration assay using RD cells, as described elsewhere (Nagata et al., 2002
). Briefly, inoculated RD cells were cultured at 37 °C for 7 days, and were then observed for cytopathic effects (CPE). CCID50 was calculated using the Behrens–Kärber method (Kärber, 1931
).
Drug screening.
RD cells (1.0x104 cells per well in 100 µl medium) were cultured at 37 °C in 96-well plates (White Opaque Tissue Culture Plate; Becton Dickinson), followed by addition of 10 µl of 0.5 mM drug solution (final concentration of 45 µM). The cells were incubated at 37 °C for 0 or 48 h. The cells were inoculated with 100 infectious units (IU) of PV or EV71 pseudovirus in 50 µl of 10 % FCS/DMEM, and then were incubated at 37 °C for 9 h (the final concentration of drugs was 31 µM). Luciferase activity of the cells was measured with Luciferase Assay System (Promega) using a TR717 Microplate luminometer (ABI) according to the manufacturer's instructions. The inhibition index, which is the ratio of luciferase activity in the drug-treated cells to that in mock-treated cells (1.0 for mock-treated cells), was determined for each drug. 50 % inhibitory concentration (IC50), at which the drugs suppressed the infection of pseudovirus by 50 % at 9 h post-inoculation (p.i.), was determined for the drugs that showed either anti-PV or anti-EV71 activity.
Evaluation of cytotoxicity of drugs.
Cytotoxicity of drugs was evaluated by two methods: observation of cell viability at 3 days after drug treatment under the same condition as for the screening (described above) and determination of the 50 % cytotoxic concentration (CC50) of drugs by the measurement of ATP as a marker of metabolically active cells. For the measurement of ATP in cells, RD cells (3.8x104 cells per well in 100 µl medium) were cultured at 37 °C in 96-well plates (Becton Dickinson), followed by addition of 10 µl of drug solution. The ranges of the concentration of drugs examined were as follows: GW5074, 0.13–0.5 mM; metrifudil, 0.0063–0.05 mM; N6-benzyladenosine, 1.3–10 mM; NF449, 0.13–1.0 mM. The cells were incubated at 37 °C for 9 h, and were then subjected to the measurement of ATP by using a CellTiter-Glo Luminescent Cell Viability Assay kit (Promega) according to the manufacturer's instructions.
Measurement of anti-PV and anti-EV71 activities of inhibitors.
Virus solution (containing 105 CCID50 in 5 µl 10 % FCS/DMEM) was added to RD cells (2.8x104 cells per well in 100 µl 10 % FCS/DMEM) in 96-well plates (Becton Dickinson), and then the cells were incubated at 37 °C for 2 h. The cells were washed three times with 10 % FCS/DMEM, followed by the addition of 100 µl of 10 % FCS/DMEM containing each inhibitor or without the inhibitor as control. The concentrations of inhibitors examined were: 50 µM GW5074, 25 µM metrifudil, 2.5 µM N6-benzyladenosine and 50 µM NF449. The cells were then incubated at 37 °C for 7 h and collected at 9 h p.i. and stored at –70 °C. For the analysis of the effect of NF449 on virus adsorption and/or uncoating, the inhibitor was added to the cells just before adding the virus solution, and the cells were then incubated at 37 °C for 2 h, followed by three washes with 10 % FCS/DMEM and incubated in the absence of NF449 at 37 °C for 7 h (0–2 h incubation, Table 2
). The viral RNA was extracted from the collected cells using a High Pure Viral RNA purification kit (Roche), and the number of copies of viral RNA was quantified using a real-time TaqMan PCR system (described below). The inhibition index, which is the ratio of the luciferase activity or of the number of copies of viral RNA in inhibitor-treated cells to that in mock-treated cells (1.0 for mock-treated cells), was determined for each inhibitor (Fig. 2
and Table 2
).
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Isolation of PV and EV71 mutants resistant to inhibitors.
Virus solutions of PV1(Mahoney), EV71(BrCr-TR) and EV71(Nagoya) (containing 106 CCID50 in 5 µl 10 % FCS/DMEM) were added to RD cells (1.0x104 cells per well in 100 µl 10 % FCS/DMEM) in 96-well plates (Becton Dickinson) in the presence of the inhibitors. The concentrations of inhibitors examined were: 25–100 µM GW5074, 10 µM metrifudil, 0.25–5 µM N6-benzyladenosine and 25–100 µM NF449. The cells were incubated at 37 °C and collected when all the cells exhibited CPE or at day 3 p.i. Collected cell lysates for each inhibitor were mixed and then used for the next passage in the presence of each inhibitor. The passage was repeated twelve times or until a resistant phenotype was observed for the isolates compared with the parental strains in the presence of each inhibitor. The viral RNAs of the isolates were extracted from the collected cell lysates by using a High Pure Viral RNA purification kit (Roche), and the sequences of the viral genomes of the isolates were analysed in the capsid protein coding region (for mutant resistant to NF449) or in the non-structural protein coding region (for mutants resistant to metrifudil and N6-benzyladenosine) to identify the mutations required for the resistance.
Knockdown analysis by RNA interference (RNAi).
Knockdown analysis was performed by utilizing RNAi with small interfering RNA (siRNA; Elbashir et al., 2001
). Three sets of siRNA against Raf-1, B-Raf, Pim-1, -2 and -3, HIPK2, GAK, MST2 and ATF-3 were designed in the conserved regions among the transcript variants and were prepared as 50 µM solutions of RNA duplex (Supplementary Table S1). For negative controls of each siRNA, RNA duplex with scramble sequences against each cellular-mRNA-specific RNA duplex, which did not show specificity to known cellular mRNAs but with the same nucleotide constitution as the cellular-mRNA-specific RNA duplex, was designed and prepared as 50 µM solutions of RNA duplex. RNA duplex solution (final concentration 0.1 µM) was transfected into RD cells (8.0x103 cells) in 96-well plates by using Lipofectamine RNAiMAX Reagent (Invitrogen) according to the manufacturer's instructions. The cells were incubated at 37 °C for 48 h and the supernatant was removed and replaced with 100 µl per well of 10 % FCS/DMEM. At 72 h post-transfection, the cells were inoculated with 100 IU PV pseudovirus in 100 µl 10 % FCS/DMEM, and then were incubated at 37 °C for 8 h. Luciferase activity in the cells was measured with the Luciferase Assay System (Promega) using TR717 Microplate luminometer (ABI) according to the manufacturer's instructions. For Western blot analysis of Raf-1 and B-Raf, RNA duplex solution (final concentration 0.1 µM) was transfected into RD cells (2.0x105 cells) in 6-well plates by using Lipofectamine RNAiMAX Reagent (Invitrogen) according to the manufacturer's instructions. The cells were incubated at 37 °C for 48 h and the supernatant was removed and replaced with 2 ml 10 % FCS/DMEM per well. The cells were further incubated at 37 °C for 24 h, and were then subjected to Western blot analysis.
Western blot analysis.
siRNA-treated RD cells (3.9x105 cells) were collected in 100 µl cell lysis buffer [21 mM HEPES buffer (pH 7.4), 1.8 mM disodium hydrogenphosphate, 137 mM NaCl, 4.8 mM KCl, 0.5 % Nonidet P-40 and 0.5 mM EDTA] at 72 h post-transfection, and then were subjected to 5–20 % gradient PAGE (e-PAGEL; Atto) in a Laemmli buffer system (Laemmli, 1970
). The proteins in the gel were transferred to a polyvinylidene difluoride filter (Immobilon; Millipore) and blocked in phosphate-buffered saline (PBS) [10 mM phosphate buffer (pH 7.0), 135 mM NaCl and 2.6 mM KCl] containing 5 % non-fat dry milk. The filters were incubated with rabbit anti-Raf-1 antibody (Sigma) or with anti-B-Raf antibody (Santa Cruz Biotechnology) (1 : 500 and 1 : 50 dilution in PBS containing 0.1 % Tween 20 and 0.5 % non-fat dry milk, respectively) at room temperature for 1 h. The filters were washed with PBS containing 0.1 % Tween 20 three times for 5 min each, and then incubated with donkey anti-rabbit IgG antibodies conjugated with horseradish peroxidase (Amersham Biosciences) (1 : 1000 dilution in PBS containing 0.1 % Tween 20 and 0.5 % non-fat dry milk) at room temperature for 1 h. The filters were washed with PBS containing 0.1 % Tween 20 three times for 5 min each, and then treated with SuperSignal West Femto Maximum Sensitivity Substrate (Pierce Biotechnology) for the detection of the signal.
Measurement of the interferon response.
RD cells (2.8x105 cells) in 6-well plates were treated with siRNA (for Raf-1 and B-Raf, collected at 72 h post-transfection), GW5074 (6.25 µM or 25 µM at 37 °C, collected after 4 h incubation) or poly IC (collected at 24 h post-transfection), and the total RNA was extracted from the treated cells with a High Pure RNA Isolation kit (Roche). The relative expression levels of OAS1 and STAT1 mRNAs in the cells were determined by real-time PCR using primers in an IFN Response Watcher kit (TaKaRa) with a One Step SYBR PrimeScript RT-PCR kit II (Perfect Real Time) kit (TaKaRa). β-actin mRNA was used as the endogenous control, and the expression levels of OAS1 and STAT1 mRNAs in treated cells were normalized by the expression levels in the mock-treated cells.
| RESULTS |
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Characterization of identified anti-PV and anti-EV71 inhibitors
We determined the IC50 and CC50 of identified inhibitors against pseudovirus infection (Fig. 3
and Table 1
). The IC50 values of the inhibitors against EV71 pseudovirus infection in RD cells were of the micromolar order, except N6-benzyladenosine, whose IC50 was 0.1 µM (Fig. 3a
). IC50 of GW5074 against PV pseudovirus infection was determined in RD cells and also in cell lines of different origins (HEp-2c and mouse L20B cells). GW5074 was effective in these cells, with an IC50 of 2.3–6.0 µM (Fig. 3b
). CC50 of the inhibitors was determined by measuring ATP derived from viable cells. The selectivity index (SI) of each inhibitor ranged from >38 to 33 000 (Table 1
). To examine the specificity of the inhibitory effect of GW5074, we analysed the effect on the infection of SeV, which is a negative strand RNA virus belonging to the family Paramyxoviridae (Fig. 3c
). GW5074 had no inhibitory effect on SeV infection (at most threefold reduction of luciferase activity in the treated cells), in contrast to its strong inhibitory effect on PV pseudovirus infection.
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To characterize further the target of these inhibitors, we isolated virus mutants resistant to these inhibitors (Table 1
). EV71 mutants resistant to metrifudil, N6-benzyladenosine and NF449 treatments were isolated within five passages. Sequence analysis of the viral genomes showed mutations in protein 2C in mutants resistant to metrifudil (mutations at nt 5050 and 5815) and to N6-benzyladenosine (mutations at nt 4428 and 5048), and mutations in VP1 capsid protein were observed in a mutant resistant to NF449 (mutations at nt 2734 and 3173). The critical mutations for the resistant phenotype against each inhibitor were determined by using pseudoviruses carrying corresponding mutations (Fig. 4
). The determinants for the resistance to metrifudil, N6-benzyladenosine and NF449 on the EV71 genome are a single mutation at nt 5050 (change of A to G) resulting in an amino acid change of glutamic acid to glycine at amino acid position 325 of protein 2C for metrifudil resistance, double mutations at nt 4428 and 5048 (changes of C to U and A to G, respectively) resulting in an amino acid changes of histidine to tyrosine and isoleucine to methionine at amino acid positions 118 and 324 of protein 2C for N6-benzyladenosine resistance, and double mutations at nt 2734 and 3173 (changes of G to C and A to G, respectively) resulting in amino acid changes of glutamic acid to glutamine and lysine to arginine at amino acid positions 98 and 244 of protein VP1 for NF449 resistance. In contrast, PV and EV71 mutants resistant to GW5074 treatment were not isolated after 12 passages in the presence of GW5074. These results suggested that the target step of GW5074 was much more conserved in PV and EV71 infection than those of metrifudil, N6-benzyladenosine and NF449, and that the inhibitory effect could not be overcome by the mutations of the viral proteins.
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| DISCUSSION |
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In contrast to metrifudil, N6-benzyladenosine and NF449, the inhibitory effect of GW5074 did not allow the emergence of revertants under the conditions examined. GW5074 was originally identified as a Raf-1 inhibitor (Lackey et al., 2000
), but also inhibits various kinases in vitro, including Pim isoforms (Pim-1, -2 and -3), HIPK2, RIP2, GAK and MST2, and those are considered as more potent targets of GW5074 than Raf-1 (Bain et al., 2007
). RIP2 could be strongly inhibited by a p38 inhibitor, SB202190, which showed no inhibitory effect on PV and EV71 infections (data not shown). Infact, the in vivo effect of GW5074 is enigmatic: GW5074 has a neuroprotective action in neurones by activating, but not by inhibiting, B-Raf (Chen et al., 2008
). This action was independent of the MEK/ERK signalling pathway, but depended on downregulation of ATF-3 mRNA (Chen et al., 2008
). However, siRNA treatments against these putative targets did not consistently suppress PV replication (Fig. 6a
). Interestingly, one set of siRNA against MST2 (siRNA03) showed a partial inhibitory effect without inducing an apparent interferon response. However, other sets of siRNA against MST2 failed to show the inhibitory effect, and one set (siRNA01) rather stimulated the infection (Fig. 6a
). Therefore, the target of GW5074 for its inhibitory effect seemed different from those of in vivo neuroprotective action (B-Raf and ATF-3), but should be conserved among the enterovirus infections. It is also possible that GW5074 reacted with highly conserved region of the viral proteins for its inhibitory effect. The identity of the target of GW5074 in the inhibitory effect of PV replication remained to be further identified.
In summary, we have characterized four compounds with high anti-EV71 and/or anti-PV activity. Live and inactivated vaccines have been established for PV and used for global eradication of poliomyelitis (Sabin, 1965
; Salk et al., 1954
). However, there is no effective therapy for vaccine-associated paralytic poliomyelitis, which is caused by virulent revertants of vaccine strains at a rate of one case per 520 000 doses associated with the first dose of the vaccine (Nkowane et al., 1987
). For EV71, various vaccine candidates and therapies are being developed, but no vaccine has been established (Chen et al., 2006
; Chiu et al., 2006
; Liu et al., 2005
, 2007
; Shih et al., 2004
; Tan & Cardosa, 2007
; Tung et al., 2007
; Wu et al., 2007
; Yu et al., 2000
). The results obtained in this study would be useful for the identification of novel targets to develop anti-enterovirus drugs that could serve as therapeutic and/or prophylactic agents against acute neurological diseases caused by enterovirus infection.
| ACKNOWLEDGEMENTS |
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Received 8 April 2008;
accepted 16 May 2008.
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