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1 Department of Applied Chemistry and Microbiology, FIN-00014 University of Helsinki, Finland
2 Plant Pathology Programme, Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA, UK
3 A. N. Belozersky Institute of Physico-Chemical Biology, Moscow State University, Moscow 119992, Russia
Correspondence
Kristiina Mäkinen
kristiina.makinen{at}helsinki.fi
| ABSTRACT |
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| INTRODUCTION |
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Efficient potyvirus transport through plasmodesmata requires specific interactions between CI and the coat protein (CP). CPs of three different potyviruses were found to interact only with their homologous CI proteins in mixed infections (Langenberg, 1993
). In the yeast two-hybrid system, PVA CI interacts strongly with HC-Pro (Guo et al., 2001
). According to the current models of potyvirus infection (Carrington et al., 1998
; Roberts et al., 1998
), CI in an infected cell attaches to plasmodesmal apertures forming a cone-shaped structure, and newly formed virions or ribonucleoprotein complexes associate with a central channel in the structure. CI then mediates the passage of virus into the next cell by feeding virions or transport complexes through the CI structures and plasmodesmata to the adjacent cell. This occurs only during the phase of active virus replication in the cell, after which the inclusion bodies disassociate from the cell wall, accumulate in the cytoplasm and begin to degenerate (Roberts et al., 1998
). This model is supported by the fact that plasmodesmata-associated CI structures have been shown to contain CP and viral RNA (Rodríguez-Cerezo et al., 1997
; Roberts et al., 1998
). In pea seed-borne mosaic virus infection, the CP forms fibrils similar to virus particles in the central core of the pinwheel structures and plasmodesmal cavities (Roberts et al., 1998
).
Recent studies on filamentous plant virus particles using atomic force microscopy (AFM) have revealed the presence of virion tails at one end of the particles of closteroviruses (Peremyslov et al., 2004
; Alzhanova et al., 2007
). Similar protruding tip structures have also been found in potyviruses (Torrance et al., 2006
). Although no tip structure was observed in potexvirus particles, the movement protein, triple gene block protein 1 (TGBp1), was shown to be attached to one of the extremities of potato virus X (PVX) filamentous virions (Atabekov et al., 2000
) and of in vitro-assembled, single-tailed, ternary CP–RNA–TGBp1 complexes (Karpova et al., 2006
). These virion terminal structures consist of movement-related viral proteins harbouring enzymic activities such as ATPase (Peremyslov et al., 1999
) and helicase (Kalinina et al., 2002
). Potyviral CI has also been shown to have RNA helicase and ATPase activities (Laín et al., 1990
, 1991
; Eagles et al., 1994
). As the presence of RNA helicase activity has been demonstrated in the terminal structures of filamentous clostero- and potexviruses, we decided to study whether CI interacts with PVA virion structures. A virus purification protocol that allowed separation of two different PVA populations from infected plants was developed and the presence of PVA CI in these virus samples was studied. Both electron microscopy (EM) and AFM techniques, in addition to biochemical analysis, were used to compare the properties of these virus populations.
| METHODS |
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Recombinant protein expression and purification.
His6-tagged proteins CP, VPg and CI were expressed from pQE-30 expression vectors (Merits et al., 1998
) in Escherichia coli strain M15(pREP4) cells for 4 h with IPTG induction and purified using Ni–NTA agarose (Qiagen) according to standard protocols under denaturing and native conditions. Proteins purified under denaturing conditions were refolded by rapid dialysis against water at room temperature (
22 °C).
SDS-PAGE and Western blotting.
Protein and virus samples were separated by 12 % SDS-PAGE. Gels were stained with Coomassie Brilliant Blue R-250 (Sigma-Aldrich) and Safe Coomassie (Bio-Rad Laboratories), or blotted by electrophoretic transfer to a PVDF membrane (Immobilon-P; Millipore). Quantification of the band intensities in the Coomassie-stained SDS-PAGE was done using the volume array tool of Quantity One 1-D Analysis Software (Bio-Rad). Western blot membranes were blocked for 15 min in 2 % dried milk in PBS and incubated for 60 min with either rabbit polyclonal anti-CP antiserum or affinity-purified rabbit polyclonal anti-CI IgG (both diluted 1 : 2000 in PBS). Proteins were detected with alkaline phosphatase-conjugated anti-rabbit IgG (Sigma-Aldrich) diluted 1 : 5000 in PBS.
Immunoprecipitation.
PVA particles were immunoprecipitated with protein A-coated magnetic beads (diameter 2.8 mm, Dynabeads; Dynal Biotech ASA), following the manufacturer's protocol. Briefly, protein A-coated magnetic beads were washed with 100 mM sodium phosphate buffer (pH 8.1), incubated with affinity-purified polyclonal anti-VPg IgG for 10 min at room temperature and again washed with 100 mM sodium phosphate buffer (pH 8.1). For cross-linking of the antibodies to protein A, beads were washed twice with 200 mM triethanolamine (pH 8.2) and incubated in 20 mM dimethyl pimelimidate dihydrochloride in 200 mM triethanolamine for 30 min at 20 °C by rotating the tube. The beads were then incubated in 50 mM Tris/HCl (pH 7.5) for 15 min at room temperature and washed three times with PBS buffer. The cross-linked beads were incubated with purified PVA particles for 60 min at room temperature and washed three times with PBS buffer. After washing, beads were resuspended in 15 µl PBS and used for analysis by SDS-PAGE and Western blotting.
EM.
For immunogold-labelling experiments, PVA particles were labelled essentially as described previously (Puustinen et al., 2002
), except that grids with bound virus were incubated with diluted anti-CI antibodies and with pre-immune serum.
ATPase assays.
An ATPase assay with natively purified recombinant CI protein and purified PVA particles was performed using an EnzChek phosphate assay kit (Molecular Probes) according to the manufacturer's protocol. One reaction was performed in 100 µl reaction mixture containing 5 µl of the supplied 20x buffer [1 M Tris/HCl (pH 7.5), 20 mM MgCl2], 20 µl MESG substrate (2-amino-6-mercapto-7-methylpurine ribose), 1 µl purine nucleoside phosphorylase, 10 mM DTT and additional MgCl2 to give a final concentration of 3.5 mM. ATPase activity was measured over time by monitoring UV light absorbance at 355 nm.
Matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometric analysis.
A sample of purified PVA particles (
35 µg) was separated by 12 % SDS-PAGE and stained with Coomassie Brilliant Blue. The gel piece containing the band of interest was destained with 200 µl 50 % 0.25 M ammonium bicarbonate (AMBIC)/50 % acetonitrile (ACN) for 15 min and then treated with 200 µl 100 % ACN. The gel was dried in a HetoVac vacuum centrifuge for 5 min and rehydrated in 100 µl 20 mM DTT in 0.1 M AMBIC for 30 min at 56 °C. The liquid was removed and the gel piece was treated with ACN as above, alkylated with 100 µl 55 mM iodoacetamide in 0.1 M AMBIC for 15 min at room temperature in the dark, washed with 100 µl 0.1 M AMBIC and treated again with ACN as above. The gel piece was rehydrated with 10 µl 0.02 µg trypsin (Promega) µl–1 in digestion buffer (90 % 0.1 M AMBIC/10 % ACN) for 10 min at room temperature. Digestion buffer (10 µl) was added and the sample was incubated at 37 °C for 16 h. To recover the peptides from the digest, the gel piece was placed in a clean Eppendorf tube and 10 µl 25 mM AMBIC was added and incubated for 15 min at room temperature. The supernatant was recovered and the procedure was performed twice with 10 µl 5 % formic acid, after which the sample was desalted using a Millipore µC18 ZipTip and the peptides were eluted with 60 % ACN/0.1 % trifluoroacetic acid/
-cyano-4-hydroxycinnamic acid matrix onto the MALDI-TOF probe. The peptides were subjected to MALDI-TOF analysis using an Ultraflex TOF/TOF instrument (Bruker Daltonik). Protein identification was performed using the Mascot peptide mass fingerprint program (http://www.matrixscience.com).
AFM.
Different samples of PVA virions (P1, F or P2) were diluted to
5 ng µl–1 in 0.02 M phosphate buffer (pH 7.3) and 5–10 µl was placed onto freshly cleaved mica strips for 5–15 min. The strips were rinsed with deionized water and vacuum dried at room temperature. Imaging of particles was carried out in the tapping mode as described by Torrance et al. (2006)
in air at a frequency of 300–380 kHz on a NanoScope IIIa multimode scanning probe microscope (Digital Instruments) using standard AFM silicon nitride cantilevers with a length of 123 µm (Nanosensors). Images were processed with NanoScope software and transferred to Photoshop (Adobe Systems) for layout.
Translation.
The gene for Renilla luciferase (RLuc) was cloned to substitute for the green fluorescent protein gene in the infectious cDNA clone of PVA (Ivanov et al., 2003
; Kelloniemi et al., 2006
). The resulting infectious cDNA copy of PVA : : rluc RNA was used to infect tobacco plants and for subsequent virus purification. Purified PVA particles corresponding to 100 ng encapsidated PVA : : rluc RNA and 100 ng rluc-containing viral RNA were translated in a Wheat Germ Extract kit (Promega) according to the manufacturer's instructions. Translation efficiency was monitored by measuring the production of the RLuc activity in the samples using a Renilla Luciferase kit (Promega). Luciferase activity was measured at room temperature for 5 s with a 1 s initial delay in a Luminoskan TL Plus (Thermo Labsystems).
| RESULTS |
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730 nm (Fig. 5a
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| DISCUSSION |
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An important question is how the link between CI and the virus could be formed. There are reports of potyviral CI–CP interactions in vivo (Rodríguez-Cerezo et al., 1997
; Riedel et al., 1998
; Guo et al., 2001
), but to our knowledge no interaction between CI and VPg has been reported. PVA CI seems to interact strongly with HC-Pro (Guo et al., 2001
). A similar interaction was shown for CI and HC-Pro of wheat streak mosaic virus, a member of the genus Tritimovirus, family Potyviridae (Choi et al., 2000
). These observations point to two possibilities: either the virion-associated CI could be in contact with HC-Pro or it could interact directly with CP. In AFM experiments, HC-Pro was detected solely in the tip structures of PVY particles labelled with anti-HC-Pro antibodies, whereas VPg was also detected with anti-VPg antibodies in particles containing no apparent tip structure (Torrance et al., 2006
). Our immunogold-labelling EM data indicated that CI was associated with one end of approximately 1 % of the particles. HC-Pro has been detected at the ends of only 2 % of PVA and PVY virions by immunogold labelling (Torrance et al., 2006
). If, as stated above, the tip structures are relatively fragile, this might explain the difference in detection of CI structures between EM and Western blots. Nevertheless, the EM studies support the premise that CI may associate with HC-Pro in the PVA tip structure and that transport complex-associated CI could be an important constituent of the tip.
A few years ago, the complex molecular architecture of closteroviruses was reported (Peremyslov et al., 2004
). The potyvirus tips in the AFM figures resemble those from beet yellows virus (BYV), except that the BYV tail is tripartite, whereas only two parts have been detected in the potyvirus tips (Torrance et al., 2006
). One of the four proteins in the BYV tail structure is the virus-encoded p65 homologue of the cellular Hsp70 molecular chaperone, which has ATPase activity (Kalinina et al., 1996
; Agranovsky et al., 1997
). Recently, it was demonstrated that the actin cytoskeleton interacts with the viral Hsp70 homologue and targets it to plasmodesmata (Prokhnevsky et al., 2005
), and it was shown that the ATPase activity of the Hsp70 homologue is required for BYV cell-to-cell movement (Peremyslov et al., 1999
). Although it is known that CI associates with plasmodesmata, no association between the potyviral CI and cell cytoskeleton has been shown. Neither is it clear whether the ATPase activity of potyviral CI is required for cell-to-cell movement, as not all CI mutations that abolished plum pox virus cell-to-cell movement affect the ATPase activity (Gómez de Cedrón et al., 2006
). We detected ATPase activity in all of the purified preparations of virus particles. The ATPase activity was four times weaker in preparations of F sample virions that did not contain detectable CI (by Western blotting); weak ATPase activity in the F sample might be explained by the presence of a few active CI molecules remaining attached to the F sample particles, as detection of an enzymic activity may be more sensitive than the antibody-based detection of PVA CI. It has also been shown that PVA CP has ATPase activity (Rakitina et al., 2005
), which may have contributed to the low level detected.
Vaccinia virus DexH/D group RNA helicase/ATPase NPH-II can displace proteins from an RNA substrate (Jankowsky et al., 2001
). Protein displacement is independent of RNA duplex unwinding (Fairman et al., 2004
). Potyviral CI has also been shown to belong to the DexH/D group of helicases (Fernández et al., 1995
, 1997
; Fernández & García, 1996
) and CI was reported to unwind RNA duplexes in the 3'
5' direction in plum pox virus (Lain et al., 1990). A similar RNA helicase activity was described for the PVX movement protein TGBp1, but in this case RNA unwinding was bidirectional (Kalinina et al., 2002
). Binding of TGBp1 to PVX particles converts the particles from a non-translatable into a translatable form (Atabekov et al., 2000
). A very similar result was obtained by PVX CP phosphorylation (Atabekov et al., 2001
). The binding of TGBp1 helicase to the PVX virions induced virus particle disassembly and formation of the beads-on-a-string structure (Kiselyova et al., 2003
). Thus, in the PVX system, binding of TGBp1 to virions initiates particle destabilization and prepares them for translation. In contrast, our results suggest that attachment of CI to PVA particles is required to retain the particle integrity. Particles in the F samples, devoid of CI and according to the AFM results less stable than the P2 particles, were more translatable. As the addition of CI did not reduce the translatability of the F particles, it is probable that the presence of CI is not directly responsible for the low translatability of P1 and P2 particles. The factors that prepare PVA particles for translation require further investigation; however, our data allow us to propose that detachment of CI structures from particles during transport through the plasmodesmata to adjacent cells may be required. Due to the likely location of CI at the virion end corresponding to the 5' end of the genome and its ATPase and RNA helicase activities, CI may provide a molecular motor function both to disassemble and to translocate the viral genome through the plasmodesmatal pore. Our results imply that the concept of virion-associated movement devices first described for closteroviruses (Peremyslov et al., 2004
) may be applicable to a broader range of evolutionarily diverse filamentous viruses.
| ACKNOWLEDGEMENTS |
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Received 28 August 2007;
accepted 7 November 2007.
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