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Graduate Institute and Department of Microbiology, College of Medicine, National Taiwan University, Taipei, Taiwan, ROC
Correspondence
Mei-Ru Chen
mrc{at}ntu.edu.tw
| ABSTRACT |
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Supplementary figures showing the effects of BGLF4 on the expression of Sp1 and ZBP-89, the in vitro immunoprecipitation kinase assay and an amino acid sequence alignment of BMRF1 and PF8, and a supplementary table showing oligonucleotide primers and plasmid DNA templates used to generate site-directed mutants of BMRF1, are available with the online version of this paper.
| INTRODUCTION |
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Transcription-coupled viral DNA replication is a common phenomenon among human herpesviruses for the initiation of lytic replication. The promoters within lytic origin of replication (oriLyt) regions, which have been identified in human cytomegalovirus, Kaposi's sarcoma-associated virus (KSHV or human herpesvirus 8) and EBV, are crucial for viral lytic replication (AuCoin et al., 2004
; Hammerschmidt & Sugden, 1988
; Xu et al., 2004
). Because the promoter regions within oriLyt are important for viral replication and can be substituted by other functional promoters, the transcription machinery has been suggested to remodel the viral chromatin structure and thereby facilitate the binding of the DNA polymerase complex to the viral DNA template (Xu et al., 2004
).
In addition to DNA polymerase, functional replication machinery requires a DNA processivity factor (PF), which also is known as an accessory factor or sliding clamp, to stabilize DNA binding by the polymerase during replication (Ellison & Stillman, 2001
). The EBV PF BMRF1 (EA-D) has single-stranded (ss) and double-stranded (ds) DNA-binding activities and increases the activity of the viral DNA polymerase BALF5 through direct interaction (Li et al., 1987
; Tsurumi, 1993
; Tsurumi et al., 1993
). In addition to the processivity function, BMRF1 also has a transactivation activity on the viral oriLyt BHLF1 promoter and cellular gastrin promoter (Holley-Guthrie et al., 2005
; Zhang et al., 1996
, 1997
). EBV oriLyt is located within the divergent promoter regions of two early genes, BHLF1 and BHRF1. The BHLF1 promoter is probably the most active EBV promoter and is activated by either Zta or BMRF1 alone or, maximally, by the synergistic effect of both proteins (Zhang et al., 1996
). BMRF1 transactivates the oriLyt BHLF1 promoter through the Sp1/ZBP-89-responsive element within the downstream component (Zhang et al., 1997
). Even without affecting Sp1 responsiveness, a mutation altering the sequence GATGG within the Sp1/ZBP-89 sites (–588 to –592 relative to the BHLF1 transcription-initiation site) reduced BMRF1 responsiveness by 75 % and abolished oriLyt replication (Zhang et al., 1997
). Therefore, BMRF1-induced activation of the oriLyt region is considered to be crucial for viral DNA replication (Zhang et al., 1997
).
Herpesvirus PFs have frequently been found to be phosphoproteins (Chan & Chandran, 2000
; Chang & Balachandran, 1991
; Chee et al., 1990
; Gibson et al., 1981
; Marsden et al., 1987
). However, the phosphorylation sites and functional regulation of the herpesvirus PFs through phosphorylation are mostly unknown. BMRF1 was found to be phosphorylated by EBV BGLF4 kinase in vitro and in co-transfected cells (Chen et al., 2000
; Gershburg & Pagano, 2002
; Wang et al., 2005
). BGLF4 induces the hyperphosphorylated isoforms of BMRF1 from pp50 (phosphoprotein 50 kDa) to pp52 and pp58 (Gershburg & Pagano, 2002
; Wang et al., 2005
) on SDS-PAGE and co-localizes with BMRF1 in the viral replication compartment (Wang et al., 2005
). Knockdown of BGLF4 expression by RNA interference (RNAi) resulted in the absence of the hyperphosphorylated isoforms, confirming that the lytic phosphorylation of BMRF1 is contributed mostly by BGLF4 (Gershburg et al., 2007
). However, the BGLF4-targeted phosphorylation site(s) on BMRF1 and the phosphorylation-mediated functional regulation of BMRF1 remain unclear.
BGLF4 is the only known viral serine/threonine protein kinase in EBV (Chen et al., 2000
) and has been suggested to mimic cellular Cdc2 (CDK1) kinase activity (Kawaguchi & Kato, 2003
; Kawaguchi et al., 2003
; Kudoh et al., 2006
; Lee et al., 2007
). It can be detected in viral particles and was suggested to interact with BXLF1 (viral thymidine kinase) by a yeast two-hybrid study (Calderwood et al., 2007
; Wang et al., 2005
). In addition to BMRF1, BGLF4 is able to phosphorylate the viral nuclear proteins EBNA-LP (Kato et al., 2003
), EBNA-2 (Yue et al., 2005
) and BZLF1 (Asai et al., 2006
), as well as the cellular translation elongation factor EF-1
(Kato et al., 2001
). Recently, BGLF4 was found, by using an RNAi approach, to be crucial for nuclear egress of virus (Gershburg et al., 2007
).
In this study, we set out to explore the regulatory function of BGLF4-mediated phosphorylation on the proline-rich hinge region of BMRF1, which separates the DNA-processivity and nuclear-localization domains and contains seven possible Cdc2 sites. Functional regulation through phosphorylation of these mapped residues was analysed for the subcellular localization, DNA-binding abilities and transactivation activities of BMRF1.
| METHODS |
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Cell lines.
HEK293T (293T) is a derivative of a human kidney epithelial cell line (ATCC no. CRL-1573). The EBV-negative cell line NPC-TW01 was established from a Taiwanese NPC (Lin et al., 1990
) and NA is a recombinant Akata EBV-converted NPC-TW01 cell line (Chang et al., 1999
).
Transfection, protein extraction and phosphatase treatment.
293T cells were transfected with appropriate amounts of DNA by using the calcium phosphate/BES method (Chen & Okayama, 1987
); NA cells were transfected by using Lipofectamine 2000 (Invitrogen). Transfected cells were harvested at the time points indicated and resuspended in RIPA buffer as described previously (Wang et al., 2005
). For phosphatase treatment, 3 µl lysate was incubated with phosphatase buffer in the presence or absence of 10 U calf intestinal alkaline phosphatase (CIP; New England BioLabs) at 37 °C for 1.5 h.
Immunoblotting.
Immunoblotting was performed in a manner similar to that described previously (Chen et al., 2000
). The primary antibodies (Abs) used were anti-BGLF4 (2616; Wang et al., 2005
), anti-Flag Ab (M2; Sigma), anti-BMRF1 Ab (Capricorn), anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) Ab (Biodesign), anti-Zta 4F10 (Tsai et al., 1997
), anti-caspase 3 Ab (Imgnex) and anti-poly(ADP–ribose) polymerase (PARP) Ab (BD Pharmingen).
In vitro transcription/translation.
Wild-type (WT) and mutant BMRF1 plasmids were expressed in vitro by using the TNT coupled reticulocyte lysate system (Promega) and T7 RNA polymerase, according to the manufacturer's protocol.
Subcellular fractionation.
The cellular fractionation protocol was modified from that described by Krajewski et al. (1993)
. The details were described previously (Wang et al., 2005
).
DNA–cellulose chromatography.
WT and mutant BMRF1 were expressed in 293T cells. At 48 h post-transfection, cells were harvested and lysed in buffer A [25 % (v/v) glycerol, 20 mM Tris/HCl (pH 7.4), 1 mM EDTA, 1 mM EGTA]. Protein lysate (200 µg) was incubated with 500 µl 40 % dsDNA–cellulose or ssDNA–cellulose for 30 min at 4 °C. The protein–cellulose mixtures were then applied to chromatography columns (Bio-Rad) with a 200 µl bed volume. The column was washed with 500 µl binding buffer [20 mM Tris/HCl (pH 7.6), 5 mM MgCl2] and then eluted with step gradients of 500 µl of each buffer containing 100, 150, 200, 250, 300, 400, 500, 600 or 1000 mM NaCl. The eluants were precipitated further by adding 50 µl 100 % trichloroacetic acid and 50 µl 0.15 % sodium deoxycholate, and subjected to immunoblotting analysis.
Luciferase assay.
293T cells were transfected with pBHLF1-luc, the amounts of transactivator plasmids indicated and Renilla luciferase reporter (pTK-Rluc) as a control for transfection efficiency. At 48 h post-transfection, cells were harvested and assayed for firefly and Renilla luciferase activities by using the Dual-Glo Luciferase Assay system (Promega). Promoter activities were determined from luciferase activity after normalization for Renilla luciferase activity in each reaction. Fold activation indicates the ratio of reporter activity to that of vector-transfected cells.
| RESULTS |
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Ser-337, Thr-344, Ser-349 and Thr-355 are the BGLF4 target sites of BMRF1
We then identified the BGLF4 phosphorylation sites on BMRF1 by introducing specific point mutations (Fig. 1a
). The first set comprised Ser-314, Ser-333, Ser-337 and Thr-344. Flag–BMRF1 WT or mutants were transiently co-expressed with BGLF4 or vector control (VC) in 293T cells. Because S314A and S333A displayed similar BGLF4-induced hyperphosphorylation patterns to the WT (Fig. 2a
, lanes 4, 8 and 10), these two residues were excluded as BGLF4 target sites. BGLF4-induced hyperphosphorylation isoforms decreased for S337A and T344V (Fig. 2a
, lanes 12 and 14). A more obvious decrease in hyperphosphorylation was detected for the S337A/T344V double mutant (Fig. 2b
, lane 4). Because residual BGLF4-induced hyperphosphorylation isoforms were observed in S337A/T344V, other residues might be targeted by BGLF4. We then determined whether Ser-349, Thr-355 or Ser-335 is targeted by BGLF4. Compared with S337A/T344V, both S337,49A/T344V and S337A/T344,55V (Fig. 2b
, lanes 2, 4, 6 and 8), but not S335,37A/T344V (Fig. 2c
, lane 6), displayed a further decrease in BGLF4-induced hyperphosphorylation. Therefore, Ser-349 and Thr-355, but not Ser-335, are also BGLF4 target residues. The quadruple mutant S337,49A/T344,55V (2A2V) was then generated and co-expressed with BGLF4 in 293T cells. We found that BGLF4-induced hyperphosphorylation was abolished in 2A2V (Fig. 2d
, lane 6). To rule out a possible structural change affecting the ability of 2A2V to interact with BGLF4, both Flag–BMRF1 WT and 2A2V were co-expressed with BGLF4 and immunoprecipitated by using anti-Flag Ab. BGLF4 was apparently co-immunoprecipitated by both Flag–BMRF1 WT and 2A2V (Fig. 2e
). Here, we conclude that Ser-337, Thr-344, Ser-349 and Thr-355 are the major BGLF4 target sites of BMRF1.
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The hyperphosphorylated form of BMRF1 was detected predominantly in the nucleus in our previous study (Wang et al., 2005
). The nuclear-localization signal (NLS) was mapped to aa 383–397 of BMRF1, which is very close to the mapped BGLF4 target sites (Zhang et al., 1999
). To determine whether phosphorylation affects NLS function, subcellular fractionation of Flag-tagged WT BMRF1, 2A2V, 1D1E and 2D2E was carried out in 293T cells. In essence, all BMRF1 proteins displayed a predominantly nuclear localization (Fig. 4a
).
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As a DNA polymerase PF, BMRF1 is able to bind both dsDNA and ssDNA non-specifically through the N-terminal 300 aa (Chen et al., 1995
; Kiehl & Dorsky, 1995
; Tsurumi, 1993
). To determine whether phosphorylation affects the DNA-binding ability of BMRF1, 293T cell lysates expressing WT or mutant BMRF1 were applied to dsDNA–cellulose or ssDNA–cellulose chromatography columns and eluted with NaCl step gradients. WT BMRF1, 2A2V, 1D1E and 2D2E were all detected predominantly in the 250 mM NaCl fraction (Fig. 4d
), indicating that the dsDNA-binding activity is not regulated through BGLF4-induced phosphorylation. Notably, 2A2V was detected in a broader range of eluant fractions. In ssDNA binding, the phosphorylation-mimicking mutants 1D1E and 2D2E displayed a slight decrease in binding ability compared with WT BMRF1. 2A2V also displayed a broad spectrum of binding ability to ssDNA–cellulose. However, WT BMRF1 and all of the mutants were eluted predominantly at 300 mM NaCl (Fig. 4e
). Therefore, phosphorylation at Ser-337, Thr-344, Ser-349 and Thr-355 of BMRF1 seemed not to be crucial for the DNA-binding properties of BMRF1.
Phosphorylation modulation of BMRF1-induced BHLF1 activation
BMRF1 is known to transactivate the BHLF1 promoter within the oriLyt region (Zhang et al., 1996
). This transactivation is suggested to be important for lytic replication. BMRF1 and BGLF4 are able to localize within the viral replication compartment; we therefore suggested that BGLF4 might regulate BMRF1-induced BHLF1 activation.
To test this possibility, increasing amounts of WT BMRF1, phosphorylation-defective mutant 2A2V or phosphorylation-mimicking mutant 2D2E were expressed in 293T cells together with the luciferase reporter plasmid (pBHLF1-luc) containing nt –1006 to +90 relative to the BHLF1 transcription start site (Fig. 5a
). We found that 2A2V and 2D2E induced BHLF1 promoter activity in a dose-dependent manner, similar to WT BMRF1 (Fig. 5b
). Similar transactivation abilities among the WT and mutants were observed, suggesting that phosphorylation of Ser-337, Thr-344, Ser-349 and Thr-355 does not affect the transactivation activity of BMRF1.
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BGLF4 upregulates Zta transactivation and the synergy of BMRF1 and Zta on the BHLF1 promoter
Maximal activation of the BHRF1 promoter depends on the synergy of BMRF1 and Zta (Zhang et al., 1996
). As BGLF4 is able to phosphorylate Zta directly (Asai et al., 2006
), we examined the effect of BGLF4 on the transactivation activity of Zta in 293T cells with pBHLF-luc reporter (Fig. 6a
). In our experimental setting, expression of Zta alone gave a 56-fold transactivation of the BHLF1 promoter, whilst co-expression of BGLF4 stimulated it 124-fold. This enhancement of Zta transactivation was not observed in the presence of kinase-dead BGLF4 (Fig. 6a
). In the synergistic experiment, Zta alone gave a 31-fold and BMRF1 gave a 121-fold transactivation, whereas Zta and BMRF1 together gave a 1356-fold transactivation. In the presence of BGLF4, the synergistic effect was increased further to 3236-fold, despite the fact that BGLF4 suppressed BMRF1 transactivation from 121-fold to 37-fold (Fig. 6b
). The stimulatory effect of BGLF4 on the synergy of BMRF1 and Zta is dose-dependent and predominantly kinase activity-dependent (Fig. 6c
).
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| DISCUSSION |
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According to a prediction using NetPhos 2.0 (http://www.cbs.dtu.dk/services/NetPhos/), there are 19 serines, nine threonines and three tyrosines that constitute potential phosphorylation sites on BMRF1. BMRF1 was suggested to be targeted by viral or cellular kinases at multiple sites, due to the dramatic retardation of its mobility on SDS-PAGE, as virus replication proceeds. In this study, we demonstrated that four of the seven putative Cdc2 sites, localized within the region aa 337–355, were critical for BGLF4-induced hyperphosphorylation in vivo (Fig. 2
). The phosphorylation-mimicking mutants of BMRF1 induced an anomalous molecular mass shift on SDS-PAGE, similar to that induced by BGLF4. This suggests that the multiple-phosphorylation isoforms of BMRF1 may be the result of different levels of phosphorylation at Ser-337, Thr-344, Ser-349 and Thr-355. Additional phosphorylation of the phosphorylation-mimicking mutant 2D2E was observed, as indicated by CIP treatment (Fig. 4c
). Thus, phosphorylation at these residues may result in a conformational change of BMRF1 and facilitate further phosphorylation at other sites. In the in vitro immunoprecipitation kinase assay using recombinant baculovirus-expressed BGLF4, a much weaker phosphorylation signal was observed in glutathione S-transferase (GST)–BMRF1(d316–378) than in GST–BMRF1 (see Supplementary Fig. S2, available in JGV Online). Two additional Sp sites were found at aa 64 and 76 of BMRF1. Whether these two sites are phosphorylated by BGLF4 in vivo or contribute to BMRF1 function will need further investigation.
A possible scenario is proposed to illustrate the regulatory function of BGLF4 on BMRF1 transactivation during viral lytic replication. As revealed by the lytic gene-expression kinetics observed by microarray and Northern analysis, BMRF1 and BGLF4 are expressed after the expression of Zta (Lu et al., 2006
). Once Zta binds to oriLyt, BMRF1 can then be recruited to oriLyt through interaction with Sp1/ZBP-89. At this time, BGLF4-induced BMRF1 phosphorylation may facilitate the initiation of viral DNA replication through the enhancement of Zta–BMRF1 synergy. As lytic DNA replication proceeds, BGLF4-induced inhibition of BMRF1 transactivation may prevent the dispensable transactivation activity of BMRF1 for correct processivity function at a later stage. Overall, we suggest that BGLF4 may enhance the efficiency of viral lytic replication by modulating the activation of the oriLyt BHLF1 promoter. This hypothesis is supported in part by the observation that knockdown of BGLF4 expression causes a 30 % decrease in the intracellular viral DNA copy number (Gershburg et al., 2007
).
The precise mechanism by which BMRF1 synergizes with Zta to activate the BHLF1 promoter is not yet clear. It was found that direct interaction of Zta and BMRF1 is not required for Zta–BMRF1 synergy on the BHLF1 promoter (Zhang et al., 1996
). Thus, the synergy may be mediated by the interplay and the association of the cellular transcription factors recruited by Zta and BMRF1. Zta can interact with cellular factors such as CREB-binding protein (CBP), p53, NF-
B and the basic transcriptional machinery (Sinclair, 2003
). The interaction of Zta and TBP can stabilize the association of TFIID and the TATA motif (Lieberman & Berk, 1991
). Zta is also known to stimulate the histone acetyltransferase activity of CBP (Chen et al., 2001
). This stimulation could lead to chromatin remodelling and enhance the accessibility of oriLyt DNA around Zta-responsive elements. We propose that phosphorylated BMRF1 may form certain structures to stabilize the formation of the transcription-initiation complex containing Zta and BMRF1 around oriLyt, and therefore augment Zta–BMRF1 synergy on the BHLF1 promoter. Additionally, we demonstrate here that BGLF4 kinase activity can enhance the transactivation activity of Zta on the BHLF1 promoter. It is valuable to investigate whether BGLF4 also regulates other downstream viral promoters or Zta-responsive cellular promoters, such as TKT and MMP1 (Lu et al., 2000
, 2003
).
It has been reported that BGLF4 can downregulate EBNA-2 transactivation activity through direct phosphorylation (Yue et al., 2005
). In this study, we demonstrate that BGLF4 downregulates BMRF1 transactivation ability independently of the identified residues on BMRF1. Thus, BGLF4 may regulate BMRF1 activity through other unidentified sites. Alternatively, BGLF4 may modulate other factors involved within the oriLyt region to suppress BMRF1 induction of the BHLF1 promoter. As expression of BGLF4 induces multiple mitotic events similar to those induced by Cdc2, including chromosome condensation and nuclear-envelope breakdown (Lee et al., 2007
), it is also possible that BGLF4 may induce DNA structural change of the oriLyt region, leading to the suppression of BMRF1 transactivation activity.
The major BGLF4 target sites identified here are clustered within a hinge region-like domain of BMRF1. Hinge regions are usually flexible linkers with a high proline content and are crucial for transmitting conformational changes. Immunoglobulin hinge regions have been suggested to induce the conformational changes of the antigen-binding arms, allowing appropriate interactions with antigens (Tucker et al., 1981
). In the human androgen receptor, substituting Ser-650 in the hinge region with Ala caused a 30 % reduction of the transcriptional activity (Zhou et al., 1995
). Interestingly, Ser-337 and Thr-344 are encompassed in the conserved phosphorylation motifs of BMRF1 and another human herpesvirus PF, KSHV PF8, which are located within the functional uncharacterized domains between the processivity domain and NLS (aa 337–344 in BMRF1, aa 330–337 in PF8; see Supplementary Fig. S3, available in JGV Online). It is possible that the proline-rich regions of herpesvirus PFs act as hinge regions and are modulated by phosphorylation.
Taken together, our findings suggest that BGLF4 modulates the BMRF1 transactivation function through multiple mechanisms, which may ensure optimal initiation efficiency of lytic replication. This provides a possible model for herpesvirus kinases in regulating lytic replication through modulating oriLyt activation, and also gives an insight into the regulation of phosphorylation of the possible hinge region between the processivity domain and NLS among gammaherpesvirus PFs.
| ACKNOWLEDGEMENTS |
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Received 26 October 2007;
accepted 20 December 2007.
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