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1 USDA/ARS, Biological Integrated Pest Management Research Unit, Ithaca, NY 14853, USA
2 Department of Plant Pathology, Cornell University, Ithaca, NY 14853, USA
3 Scottish Crop Research Institute, Invergowrie, Dundee DD2 5DA, UK
Correspondence
Stewart M. Gray
smg3{at}cornell.edu
| ABSTRACT |
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| INTRODUCTION |
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The icosahedral PLRV particle is 24 nm in diameter and contains a 6 kb positive-sense, single-stranded RNA genome. PLRV virions are assembled mainly from the 23 kDa coat protein (CP), but contain minor amounts of a readthrough protein (RTP) translated when the stop codon of the CP is suppressed. The 80 kDa RTP contains the 23 kDa CP and the 57 kDa readthrough domain (RTD) (Mayo & Miller, 1999
). The RTP can substitute for a 23 kDa CP monomer when assembling into the virion. The CP portion of the RTP assembles into the icosahedral virion, while the RTD is predicted to be exposed on the surface of the particle. The ratio of RTP to CP for PLRV is unknown and appears to differ markedly between luteovirids, ranging from 1 : 4 to 1 : 100 (Bahner et al., 1990
; Filichkin et al., 1994
). Within the RTD there is a highly conserved N-terminal region and a variable C-terminal region. The full-length RTP can be detected readily in infected tissue, but in purified virus preparations a significant portion of the C terminus of the RTD is proteolytically processed yielding a 51–58 kDa RTP (Brault et al., 1995
; Filichkin et al., 1994
; Jolly & Mayo, 1994
; Wang et al., 1995
). This phenomenon has been seen among other members of the family Luteoviridae and despite such truncations, the virus is still aphid transmissible (Bruyere et al., 1997
; Wang et al., 1995
).
The RTD contains several identifiable domains. Adjacent to the CP termination codon is a cysteine-rich sequence encoding an alternating tract of proline residues, which has often been referred to as the proline hinge and may act as a tether for anchoring the RTD into the virion by joining it to the CP moiety (Guilley et al., 1994
). Following this sequence is the N-terminal domain, encompassing approximately 210 aa that are highly conserved among all luteoviruses, with about 50 % of the amino acids specifically conserved among members of the genus Polerovirus (Guilley et al., 1994
) (Fig. 1
). In addition, in barley yellow dwarf virus-PAV (BYDV-PAV), it has been shown that the cysteine-rich element proximal to the CP stop codon and a distal element spanning the N- and C-terminal junction act as translational enhancer elements for the translation of RTP (Brown et al., 1996
). Homologous sequences may also be present in poleroviruses (Bruyere et al., 1997
).
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The N- and C-terminal regions of the RTD have been shown to be involved in viral movement and accumulation in plant hosts, suggesting that both are critical for whole-plant infection (Brault et al., 2000
; Bruyere et al., 1997
; Chay et al., 1996
; Mutterer et al., 1999
). BWYV and BYDV-PAV RTD mutants have been shown to accumulate to a lower titre in infected plants than wild-type (WT) virus (Brault et al., 1995
; Chay et al., 1996
). In subsequent plant tissue immunolocalization experiments, the BWYV RTD mutants had reduced virus movement to new infection sites in Nicotiana clevelandii plants, indicating that RTD affected the efficiency with which the virus could move systemically (Mutterer et al., 1999
).
The focus of this study was to examine the biological role of the PLRV RTD. Deletion mutants were generated in order to understand better the determinants involved in virion formation, virus transmission and persistence in aphids, as well as local and systemic movement in different plant hosts.
| METHODS |
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Agrobacterium-mediated infection and analysis of infected tissue.
Using Agrobacterium tumefaciens cultures containing the full-length cDNA of the PLRV WT or one of the mutant viruses, agroinfiltration into mesophyll cells and agroinjection into vascular cells were done as described previously by Lee et al. (2005)
and Kaplan et al. (2007)
. Translation and accumulation of RTP was measured in agroinfiltrated tissue samples by Western blot analysis as described previously in Lee et al. (2005)
and Kaplan et al. (2007)
. Nicotiana benthamiana, N. clevelandii, Physalis floridana and Solanum sarrachoides plants were agroinjected and analysed for systemic infection as described previously by Lee et al. (2002)
and Kaplan et al. (2007)
.
To identify if mutant forms of the RTP were incorporated into assembled virions, virus was purified by using a modified version of the protocol of Hammond et al. (1983)
. Virus was purified from 20–30 g infiltrated N. benthamiana tissue. Following agroinoculation, plants were kept in a growth room (20 °C, continuous light) for 6 days, after which the tissue was harvested and kept at –80 °C. Frozen tissue was homogenized in a blender for three 30 s intervals in 0.1 M sodium citrate buffer (pH adjusted to 6.5 using 0.5 M NaH2PO4) containing 0.5 % 2-mercaptoethanol, at 5 ml g–1 tissue. All steps were done at 4 °C. Homogenized tissue was filtered using cheesecloth, 1/4 volume of 2 : 1 chloroform : N-amyl alcohol was added, and the mixture stirred for 25 min then was centrifuged for 10 min at 6614 g in a JA14 rotor (Beckman Coulter). The supernatant was recovered by aspiration and adjusted to 0.2 M NaCl and 8 % polyethylene glycol 8000. The mixture was stirred for 2 h and then centrifuged for 20 min at 6614 g in a JA14 rotor. The supernatant was discarded and the pellet resuspended in 1/10 the original volume of 0.1 M phosphate buffer, pH 7. The solution was centrifuged for 10 min at 1960 g in a JA20 rotor. The supernatant was layered onto a 30 % sucrose (buffered in 0.1 M phosphate buffer, pH 7) pad (1 : 4 sucrose : supernatant) and centrifuged for 2 h at 145 421 g in a Ti50.2 rotor (Beckman Coulter). The supernatant was discarded and the pellet was resuspended in 0.5 ml 0.1 M phosphate buffer, pH 7, transferred to a 15 ml Corex tube, then centrifuged for 7 min at 1960 g in a JA20 rotor (Beckman Coulter). The supernatant was layered on top of a 10–40 % linear sucrose gradient and centrifuged for 2.5 h at 111 132 g in a SW41 swinging bucket rotor (Beckman Coulter). Gradients were fractionated using a density-gradient fractionator (Teledyne-ISCO) and the virus fractions were concentrated by centrifuging for 1.5 h at 117 734 g in a Ti70 rotor (Beckman Coulter). The supernatant was discarded and the pellet was resuspended in 0.1 ml 0.1 M phosphate buffer, pH 7. Virus concentration was determined by reading the A260, A280 and A320 and using the following calculation: [(A260–A320)xdilution factor]/8.0. Purified virus was aliquotted and stored at –80 °C. CP and RTP in 100 ng purified virus were analysed by Western blotting as described previously by Kaplan et al. (2007)
.
Sequencing progeny virus in infected tissue.
The progeny viruses from systemically infected plants were analysed by RT-PCR and direct sequencing of the PCR products. Total RNA was extracted and RT-PCR was performed as described previously by Kaplan et al. (2007)
. RT-PCR analysis was done with primers PLRV 5' p4159 (5'-GATCCCGCAGGATCCTTCAGA-3') and PLRV 3' p4941 (5'-GCCGACGCCATATAGATGTGGCCCT-3'). Primers amplified a 782 bp fragment, which included a portion of the 3' end of the CP and the N-terminal region of the RTD. The RT-PCR parameters used, as per manufacturer's instructions (Invitrogen), included a reverse transcription step at 50 °C for 30 min and 94 °C for 2 min, followed by PCR, 30 cycles of 94 °C for 15 s, 58 °C for 30 s and 72 °C for 1 min, followed by one cycle of 72 °C for 10 min. The amplified fragments were sequenced as described previously by Kaplan et al. (2007)
.
Aphid transmission assays.
Systemically infected P. floridana or N. clevelandii plants were used as virus source tissue in aphid transmission assays. The tests were performed as described previously by Lee et al. (2005)
with the exception that five aphids were placed onto each plant. A 48 h acquisition access period was followed by a 4–5 day inoculation access period. The fumigated plants were placed in a greenhouse and observed for symptom expression. At 3–4 weeks post-inoculation, plants were tested for systemic infection by double antibody sandwich (DAS)-ELISA. For plants testing positive for infection, the infecting virus was sequenced using the same primers as described above.
An additional method for testing aphid transmission was to bypass feeding by injecting 0.1 µl 50 ng purified virus ml–1 into an aphid's haemocoel (Mueller & Rochow, 1961
). Five injected aphids were placed onto each of 4–6 plants per sample per experiment and feeding was terminated after 5 days. The plants were tested for infection by DAS-ELISA 3–4 weeks post-inoculation and open reading frame (ORF) 5 of the progeny viruses from infected plants was sequenced.
Virus detection in aphids.
Healthy M. persicae were allowed a 72 h acquisition access period on tissue systemically infected with WT PLRV, an RTP-incorporating mutant, or an RTP-non-incorporating mutant. Nine aphids were removed, divided randomly into groups of three and stored at –80 °C in 25 µl nuclease-free water in an RNase-free microcentrifuge tube. The remaining aphids were transferred to 3-week-old healthy plants. Aphids were similarly collected and transferred to healthy plants at 3, 6 and 9 days. Total RNA was isolated by adding 200 µl Tri-Reagent (Molecular Research Center) to each tube, and homogenizing the aphids using RNase-free micropestles, while keeping the samples on ice. The samples were incubated at room temperature for 5 min. A 40 µl volume of chloroform was added and the mixture was vortexed, and incubated at room temperature for 2–3 min. The samples were centrifuged at 16 110 g for 15 min at 4 °C. A 100 µl aliquot from the aqueous layer was removed to a new tube, and 100 µl 2-propanol and 3 µl glycogen were added and the samples were vortexed. Samples were stored overnight at –20 °C and then centrifuged for 30 min at 16110 g at 4 °C. The supernatant was removed and the pellet was washed with cold 70 % ethanol and dried. The dried pellet was resuspended in 25 µl nuclease-free water and was DNase treated using the DNA-free kit (Ambion). After DNase treatment, 5 µl was used immediately in an RT-PCR as described above. Primers PLRV 5' p3580 (5'-CCTAAAGATTTCCTCCCACGTGCG-3') and PLRV 3' p4240 (5'-GGAGTGGGTGTTGGTTGTGGGC-3') were used to amplify a 660 bp fragment, which included the CP, to indicate the presence of virus. As a control for total RNA isolation, primers were used to amplify a 301 bp fragment of 18S rRNA simultaneously during the RT-PCR reactions; forward primer (5'-CTGGCGACGCATCATTG-3') and reverse primer (5'-GAATTACCGCGGCTGCT-3').
| RESULTS AND DISCUSSION |
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N. benthamiana leaves were infiltrated with Agrobacterium containing infectious cDNA clones of the WT and the RTD mutants, which led to a nearly synchronous infection of the mesophyll cells in the infiltrated areas. Since virus infection was not limited to the phloem, this facilitated the evaluation of virus replication and protein translation, as well as virion assembly. All of the mutants accumulated within the infiltrated areas of the leaf to levels not significantly different from those for WT virus as determined by DAS-ELISA (data not shown), indicating the deletions did not affect virus accumulation and, presumably, replication. The CP and RTP were detected by Western blot analysis in total protein extracts from infiltrated leaves (Fig. 2
) by using an antibody, SCR3, that recognizes the N terminus of the CP (Torrance, 1992
). The 23 kDa CP and 80 kDa RTP for WT and 13 of 14 RTD mutants were similarly detected in infected tissue. The one exception was the SYG mutant. As expected, this mutant translated a truncated version of the RTP, of approximately 48 kDa and smaller than the truncated RTP associated with purified virus. The coding sequence for the RTD N-terminal region was sequenced for each mutant and the introduced triple amino acid deletions were maintained and no other changes were observed within this region.
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Effects of deletions in the RTD on systemic movement in different hosts
Since the RTP has been shown to be involved in virus movement and accumulation in plants (Brault et al., 1995
; Bruyere et al., 1997
; Mutterer et al., 1999
), RTD mutants were examined in N. benthamiana, N. clevelandii, P. floridana (a weed host of PLRV), and hairy nightshade, S. sarrachoides, another weed host that is a potential infective bridge for PLRV spread in the field and a preferred host for M. persicae, a major vector for PLRV (Alvarez & Srinivasan, 2005
). Multiple hosts were tested because host-specific effects have been reported for mutations in both the PLRV 17 kDa movement protein (P17) (Lee et al., 2002
) and CP (Kaplan et al., 2007
; Lee et al., 2005
). The P17 movement protein was not required for infection in the Nicotiana species, but it was required for infection in P. floridana and Solanum tuberosum (Lee et al., 2002
). Virion formation is essential for virus movement in the Nicotiana species, P. floridana and S. tuberosum, but mutations in the CP demonstrated that infection efficiencies varied among host plants (Kaplan et al., 2007
; Lee et al., 2005
).
In Agrobacterium-infiltrated tissue, large numbers of mesophyll cells are infected. This is in contrast to the natural phloem-limited infections, and usually agroinfiltration does not lead to systemic infection. In order to initiate a normal, phloem-limited infection, A. tumefaciens containing the cDNA clones of the RTD mutants were injected directly into the petiole of the leaf. This often results in a phloem-limited systemic infection, presumably since some bacteria are introduced into phloem-associated cells. This facilitated the study of virus movement, host specificity and aphid transmission. Several RTD mutants were chosen for further analysis of systemic infection in multiple hosts. In addition to the RTP-incorporating mutants (RFI, EDE and SST), four non-incorporating mutants (QSS, GHPE, ERD and SYG) were chosen because of their location in the sequence. In addition, the
RTP mutant, described previously (Liang et al., 2004
) and which does not translate RTP, was tested for its ability to cause a systemic infection in different hosts. The RTP non-incorporating mutants were selected not only to study how non-incorporated RTP virions moved in different hosts, but also to observe if the deletions affected virus movement.
The RTD mutants RFI, EDE, SST, QSS, GHPE and ERD were able to systemically infect all four hosts; however, infection was not equal among the different hosts (Table 1
). The Nicotiana species and S. sarrachoides were easily systemically infected with WT, RFI, EDE, SST, QSS, GHPE and ERD, whereas P. floridana was a more difficult host to infect. In the Nicotiana species and S. sarrachoides, infection was established similarly in the WT and the RTP-incorporating mutants, whereas RTP-non-incorporating mutants (QSS, GHPE and ERD) were delayed by approximately 1–2 weeks in reaching WT virus levels of infection as measured by DAS-ELISA. In the case of S. sarrachoides, the symptoms mirrored virus presence, i.e. only symptomatic leaves contained detectable levels of virus. This was different for the Nicotiana species, in which asymptomatic leaves often had detectable levels of virus. For each infected plant, the RTD-coding region was sequenced for each mutant virus and the three-amino-acid deletions were maintained and no additional changes in the region were detected.
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RTP mutants. The SYG mutant, which translated a truncated RTP, was not detected in the Nicotiana species and P. floridana until approximately 7 weeks post-inoculation, and in S. sarrachoides it was not detected until 10 weeks post-inoculation. WT virus was detected by 3 weeks post-inoculation. After sequencing, the SYG deletion was maintained with no additional changes in the infected Nicotiana species and S. sarrachoides plants. Interestingly, in the three SYG-infected P. floridana plants, the SYG deletion was maintained, but the second mutation downstream was filled in, such that a frameshift did not occur and the truncation of the RTP did not result. Perhaps this additional mutation, which should have restored the synthesis of a full-length RTP, allowed the movement of the SYG mutant in P. floridana. The low virus titre and the antibodies do not allow Western blot detection of the RTP in systemically infected leaves; data that would allow us to verify our hypothesis.
It was difficult to infect P. floridana with the
RTP mutant (Table 1
). S. sarrachoides was more easily infected and virus was detected as early as 6 weeks, but more typically at 8–10 weeks. The
RTP viruses in the infected plants maintained their deletions, and no additional changes were detected. The most interesting result was related to symptom development in S. sarrachoides infected with SYG and
RTP (Fig. 3
). In plants infected with viruses producing full-length RTP (WT, RFI, EDE, SST, QSS, GHPE and ERD), inter-veinal chlorosis was observed in the mature leaves, suggesting that phloem loading was being affected and the symptoms progressed to the entire plant over time (Fig. 3a–c
). In plants infected with
RTP and SYG, symptoms were first observed in the youngest tissue 6–10 weeks post-inoculation and, in contrast to the intercostal chlorosis observed with WT virus, the chlorosis was confined to small local-lesion-type areas (Fig. 3d and e
). Virus was not detected by DAS-ELISA in mature leaves and they remained asymptomatic. In the Nicotiana species and P. floridana, infection with all viruses, regardless of RTP production, produced similar symptoms, which were chlorotic leaves and decreased growth. Although systemic movement of the non-incorporating RTP mutants was slowed in the first few weeks of infection, by 4 weeks post-infection there were no differences between the WT and the RTP mutants with respect to virus distribution (measured by symptom expression) or virus detection (measured by DAS-ELISA). This suggests that the role of RTP in movement can be host-specific and that it functions as a non-structural protein although incorporation into the virion may facilitate movement early on. Further studies are under way in order to examine this hypothesis further.
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Determining the persistence of virus in aphids over time after feeding on systemically infected tissue for 72 h
Since the midgut was not the primary barrier for aphid transmission of the RTP-incorporating mutant viruses, further experiments were conducted to observe how these viruses persisted in aphids. M. persicae were fed on S. sarrachoides plants systemically infected with WT, SST (RTP-incorporating mutant), or ERD (RTP-non-incorporating mutant) for 3 days, then transferred to a different healthy plant every 3 days for 9 days. Virus was detected for up to 9 days in all samples of aphids fed on the WT and SST mutant (Fig. 4
). In contrast, there was a variable amount of virus detected among the aphids fed on ERD-infected tissue (Fig. 4
). Virions lacking RTP are capable of crossing the midgut membrane (Reinbold et al., 2001
); however, they do so less efficiently. Thus, there is likely to be aphid-to-aphid variability in how much virus will move into the protective environment of the midgut and still be detected and how much virus will pass through the digestive system and out of the aphid. The variability also could be directly associated with RTP incorporated into the virion. Although we could not detect RTP incorporated into virion for ERD (Fig. 2
), there is a possibility that some virions may have contained an undetectable amount of RTP and that these virions were able to survive in the aphid. Virus that does not contain RTP and moves into the haemocoel is likely to be sequestered or degraded more rapidly (van den Heuvel et al., 1997
). Another reason could be acquisition differences among the aphids; not all aphids will feed at the same rate or ingest the same amount of virus due to non-uniform distribution in the leaves. Despite the variability between the RTD mutants, the virus persisted in the aphids for a period sufficient for virus to be transmitted so rapid degradation does not appear to be the reason for the lack of transmission.
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We have shown that the conserved N-terminal region of the PLRV RTD is extremely sensitive to perturbations of the amino acid sequence and that most changes eliminate or significantly reduce the incorporation of the RTP into the assembled virion. These properties will complicate efforts to identify critical residues or domains within the RTD N terminus that regulate virus transport through aphids. The free RTP does, however, function as a non-structural movement protein in a somewhat host-specific manner. Domains in the N-terminal region can have minor effects on systemic movement and accumulation, but the most dramatic alterations in long distance movement appear to be regulated by the C-terminal domain of the RTD.
| ACKNOWLEDGEMENTS |
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Received 27 November 2007;
accepted 26 March 2008.
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