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Vaccine and Infectious Disease Organization, University of Saskatchewan, Saskatoon, Saskatchewan, S7N 5E3, Canada
Correspondence
Yan Zhou
yan.zhou{at}usask.ca
| ABSTRACT |
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Present address: University of Alberta, 3–7 University Hall, Edmonton, AB T6G 2J9, Canada. ![]()
| INTRODUCTION |
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SIV infection also poses very important human public health concerns because it naturally infects pigs and can be transmitted to humans (Wells et al., 1991
). Since pigs are able to support replication of swine, human and avian influenza viruses, it is very likely that genetic reassortments between these viruses could create novel influenza subtypes. Recently, avian/swine virus reassortant H2N3 influenza A viruses were isolated from diseased swine in the USA. The H2N3 virus has undergone some adaptation to the mammalian host and is able to transmit among pigs and ferrets (Ma et al., 2007
). Data from SIV surveillance studies and characterization of influenza virus isolates from pigs are critical for the understanding of long-term evolutionary and epidemiological patterns of human influenza and pandemics (Wells et al., 1991
).
The genome of influenza A viruses consists of eight segmented RNAs of negative polarity. The crucial step for infection by influenza A virus is initial virus binding to the cells followed by receptor-mediated endocytosis and fusion of the viral envelope to endosomal membranes (Cross et al., 2001
; Skehel & Wiley, 2000
). Influenza A virus entry into cells is mediated by the viral surface glycoprotein haemagglutinin (HA). HA has three major roles during virus replication: (i) HA binds to sialic acid receptors on the cell surface; (ii) it allows penetration of the virus into the cytoplasm by mediating fusion between the viral and the endosomal membranes; and (iii) it is the main viral antigen against which neutralizing antibodies are produced (Lamb & Krug, 2001
). HA is synthesized as a precursor, HA0, that consists of HA1 and HA2 (Skehel & Wiley, 2000
). In order to be infectious, HA0 must be cleaved by host proteases into HA1 and HA2. Therefore, this process is a crucial determinant of virus pathogenicity (Bosch et al., 1981
; Klenk et al., 1975
).
Multiple SIV subtypes continue to circulate in swine populations despite available vaccines. Current SIV vaccines are inactivated and their application does not provide the desired immune response and cross-protection against multiple antigenic SIV variants in the field. Application of cold-adapted, live attenuated influenza virus (LAIV) in humans and horses provided a significantly higher and more efficient immune response than killed influenza vaccines (Paillot et al., 2006
). Although recent studies by Richt et al. (2006)
showed that mutant SIV with a truncated NS1 protein was highly attenuated in pigs and conferred protection against swine influenza (Richt et al., 2006
; Solorzano et al., 2005
; Vincent et al., 2007
), there is no commercially available LAIV for SIV in North America.
It has been shown that conversion of the HA cleavage site from a trypsin-sensitive motif to an elastase-sensitive motif resulted in attenuation of viruses in vivo (Gabriel et al., 2008
; Stech et al., 2005
). However, these studies were performed with mouse-adapted influenza virus or avian influenza virus in mouse models. Application of this attenuation approach in a natural host has not been achieved yet. Here, we report that using reverse genetics we generated two mutant SIVs derived from strain A/SW/SK/18789/02 (H1N1) (SIV/SK) (Karasin et al., 2004
). The mutant SIVs encode modified HA, as such the original trypsin-specific arginine–glycine (Arg–Gly) cleavage site of HA (Garten et al., 1981
; Lazarowitz et al., 1973
) was replaced with the elastase-sensitive valine–glycine (Val–Gly) or alanine–glycine (Ala–Gly) site (Castillo et al., 1979
; Gertler & Hofmann, 1970
). These mutations resulted in the generation of HA glycoproteins that are resistant to activation during natural infection by trypsin-like proteases but can be readily activated by elastase in vitro. Furthermore, the mutant viruses are attenuated in pigs, suggesting that these genetically engineered SIVs have great potential to serve as LAIVs for SIV.
| METHODS |
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Plasmids.
Viral RNA of SIV/SK was isolated from 600 µl allantoic fluid using the RNeasy kit (Qiagen). Viral RNA (0.04 µg) was reverse transcribed into cDNA using Uni12 primer (5'-AGCAAAAGCAGG-3') (Hoffmann et al., 2001
) and Superscript II reverse transcriptase (Invitrogen) according to the manufacturer's protocol. cDNAs were then amplified by PCR using segment-specific primers (Hoffmann et al., 2001
). All eight cDNA segments were individually cloned into vector pHW2000 (kindly provided by Drs E. Hoffmann and R. G. Webster; Hoffmann et al., 2000
), resulting in constructs pHW-SIV/SK-PB2, pHW-SIV/SK-PB1, pHW-SIV/SK-PA, pHW-SIV/SK-HA, pHW-SIV/SK-NP, pHW-SIV/SK-NA, pHW-SIV/SK-M and pHW-SIV/SK-NS. Mutations in the HA coding sequence were introduced into pHW-SIV/SK-HA by site-directed mutagenesis as described previously (Shin et al., 2007a
). Plasmid pHW-SIV/HA-R345V, encoding mutant HA with Arg replaced by Val at aa 345, was generated using the primers 5'-GTCCCATCCATTCAATCCGTAGGCCTGTTTGGAGCAATTGCC-3' and 5'-GGCAATTGCTCCAAACAGGCCTACGGATTGAATGGATGGGAC-3'. Similarly, plasmid pHW-SIV/HA-R345A, encoding mutant HA with Arg replaced by Ala at aa 345, was generated using primers 5'-GTCCCATCCATTCAATCCGCGGGACTGTTTGGAGCAATTG-3' and 5'-CAATTGCTCCAAACAGTCCCGCGGATTGAATGGATGGGAC-3'. All of the above plasmids were sequenced to ensure that additional mutations were not introduced during PCR.
Generation of viruses by reverse genetics.
Wild-type (WT) and mutant viruses were generated using an eight-plasmid reverse genetics system described by Hoffmann et al. (2000)
. Briefly, 293T and MDCK cells were co-cultured at the same density (2.5x105 cells per well) in a six-well plate and maintained in DMEM containing 10 % FBS at 37 °C, 5 % CO2 for 24 h. One hour prior to transfection, medium containing FBS was replaced with fresh Opti-MEM (Invitrogen). To rescue SIV/SK-WT, cells were transfected with eight plasmid constructs (pHW-SIV/SK-PB2, pHW-SIV/SK-PB1, pHW-SIV/SK-PA, pHW-SIV/SK-HA, pHW-SIV/SK-NP, pHW-SIV/SK-NA, pHW-SIV/SK-M and pHW-SIV/SK-NS) by Transit-LT1 transfection reagent (Mirus). The viruses (rgSIV/SK-R345V and rgSIV/SK-R345A) containing mutations within the HA segment were generated in the same way but substituting pHW-SIV/HA with either pHW-SIV/HA-R345V or pHW-SIV/HA-R345A. After 6 h, the transfection mixture was replaced with 1 ml fresh Opti-MEM. Twenty-four hours post-transfection, Opti-MEM (1 ml) containing 0.4 % BSA and 2 µg L-[(toluene-4-sulphonamido)-2-phenyl] ethyl chloromethyl ketone (TPCK)-treated trypsin ml–1 (for WT virus), 1 µg human neutrophil elastase ml–1 (for mutant viruses) or 10 µg porcine pancreatic elastase ml–1 (for mutant viruses) (Serva Electrophoresis GmbH) was added to each well. Supernatants were collected 72 h post-transfection.
Western blot analysis.
Western blotting was performed as described previously (Shin et al., 2007b
) with minor modifications. MDCK cells (7x105) were plated into 35 mm dishes and were mock-infected or infected with influenza viruses at a determined m.o.i. At 8 h post-infection (p.i.), cell monolayers were lysed; 30 µg total protein was resolved on 10 % SDS-PAGE and transferred onto nitrocellulose membranes (Bio-Rad). Membranes were probed with polyclonal antiserum against nucleoprotein (NP) (1 : 2000) or M1 (1 : 2000) antibody (raised in our lab) (Shin et al., 2007b
) followed by incubation with alkaline phosphatase-conjugated anti-rabbit IgG (1 : 10 000) (Jackson ImmunoResearch Lab). The immunoblots were visualized by incubating with BCIP/NBT premix solution (Sigma).
Virus purification.
To prepare virus stocks without any protease residues for animal experiments, we purified tissue culture-grown viruses (SIV/SK-WT, SIV/SK-R345V and SIV/SK-R345A). MDCK cells grown in 10 cm dishes were infected with the viruses. Cells were incubated in the presence of either TPCK-treated trypsin or human neutrophil elastase for 36–48 h in MEM supplemented with 0.2 % BSA. Supernatants were harvested and cell debris was removed by centrifugation for 25 min, at 700 g. Viruses were pelleted by ultracentrifugation at 25 000 r.p.m. for 2.5 h at 10 °C using a Beckman Coulter Allegra 6R centrifuge, rotor SW28. Pelleted viruses were resuspended in 1 ml TSE buffer (20 mM Tris pH 7.8, 150 mM NaCl pH 7.8, 2 mM EDTA pH 7.8) and were overlaid on a 30–60 % sucrose cushion and further centrifuged at 25 000 r.p.m. for 2.5 h at 10 °C using the Beckman rotor SW41. The visible opalescent virus band on the boundary of 30 and 60 % sucrose was harvested and stored at –80 °C. Virus titres were determined by plaque assay.
Infection of pigs with SIV.
Thirty-five 4-week-old SIV-negative pigs were randomly selected and divided into seven groups with five pigs per group. Groups were housed separately in isolation rooms for 1 week prior to infection. At 5 weeks of age, pigs in group 1 were mock-infected intratracheally with 4 ml MEM, while pigs in the remaining groups were infected intratracheally with 4 ml MEM containing 1x105 p.f.u. ml–1 or 1x106 p.f.u. ml–1 of SIV/SK-WT, SIV/SK/02-R345V or SIV/SK/R345A (Table 1
). Pigs in all groups were monitored daily for 5 days and then sacrificed. All animal experiments were conducted at the Vaccine and Infectious Disease Organization, University of Saskatchewan in accordance with the ethical guidelines of the University of Saskatchewan and the Canadian Council of Animal Care.
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Necropsy and macroscopic examination of lungs.
Animals in all groups were euthanized 5 days p.i. by intravenous administration of euthanyl (25 mg sodium pentabarbitol ml–1). At necropsy, lungs were removed in toto and evaluated to determine the percentage of the lung affected with purple–red, firm lesions that are typical of SIV infection. The percentage of areas affected with pneumonia was estimated visually for each lung lobe. Total percentage for the entire lung was calculated based on weight proportions of each lung lobe to the total lung volume (Richt et al., 2003
). Tissue samples from the right apical, cardiac and diaphragmatic lobes were taken for virus isolation and histopathology examination.
Virus titration from nasal swabs and lung tissue.
Lung tissue was processed by mincing with scissors and homogenization. Processing of the tissue was performed in MEM supplemented with antibiotic/antimycotic solution at 10 % (w/v) final concentration. Each nasal swab and lung sample was subsequently thawed, vortexed for 15 s and centrifuged at 1600 g for 25 min at 4 °C. Supernatants were collected and 10-fold serial dilutions were prepared in MEM. Each dilution (five replicates) was plated onto confluent MDCK cells in 96-well plates. After 1 h incubation at 37 °C, the diluents were replaced by 200 µl MEM supplemented with 0.2 % BSA and 1 µg TPCK-treated trypsin ml–1 or 0.5 µg human neutrophil elastase ml–1. Plates were evaluated for cytopathic effect (CPE) between 24 and 96 h p.i. Virus titres were calculated according to the method described by Reed & Muench (1938)
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Histopathology evaluation.
Tissue sections of lungs were routinely stained with haematoxylin and eosin and examined microscopically for bronchiolar epithelial changes and peribronchiolar inflammation. Lesion severity was scored by the distribution or extent of lesions within the sections, examined as follows: 0, no visible changes; 1, mild focal or multifocal change; 2, moderate multifocal change; 3, moderate diffuse change; 4, severe diffuse change. A single pathologist scored all slides and was blinded for the experimental groups.
Statistical analysis.
Statistical analysis of body temperatures, macroscopic lesion scores, microscopic lesion scores and virus titres were performed using GraphPad Prism5 statistical software. Differences between the means of each group in each assay were determined by using Mann–Whitney analysis of variance methods. If the mean values of at least one group differed from others with P<0.05, they were considered statistically significant.
| RESULTS |
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We also tested the growth potential of the two mutant viruses in the presence of porcine pancreatic elastase. SIV/SK-R345V did not grow at all, suggesting that this virus is entirely dependent on human neutrophil elastase activation. Interestingly, although SIV/SK-R345A could not be rescued by porcine pancreatic elastase, it grew in the presence of this protease. After passage of SIV/SK-R345A five times with porcine pancreatic elastase, we sequenced the RT-PCR product of HA derived from SIV/SK-R345A. We found that in front of the cleavage site, Ser344 was replaced by Pro.
Mutant viruses are genetically stable
To address the genetic stability of the mutant viruses, they were passaged five times on MDCK cells at an m.o.i. of 0.001 in the presence of both trypsin and neutrophil elastase. Plaque assays were then carried out with 10-fold serial dilutions of the supernatants from the fifth passage, in the presence of either elastase or trypsin (Fig. 1d
). Well-defined plaques were seen in the presence of elastase; however, no plaques were detected in the presence of trypsin. At lower dilutions of the supernatants, while cell monolayers were completely disrupted by a higher number of infectious viral particles in the presence of elastase, no infectious particles could be detected in the presence of trypsin (data not shown). After the fifth passage, sequencing results showed that both mutant viruses retained the introduced mutations at the HA cleavage site without any other unwanted mutations, suggesting high levels of genetic stability of the mutant viruses in cell culture.
Mutant viruses are able to infect cells but their replication is restricted due to the uncleaved HA0
As a candidate for live attenuated vaccine, a virus should be able to enter cells and complete limited replication cycles. To examine whether this was the case with the mutant viruses SIV/SK-R345V and SIV/SK-R345A, MDCK cells were infected with one of these viruses at an m.o.i. of 10. After virus absorption for 1 h, cells were washed extensively and medium without any extraneous proteases was added. At 8 h p.i., supernatants were harvested and subjected to virus purification, whereas cells were lysed for Western blotting analysis using NP or M1 antibody. NP and M1 expression could be detected in the cells infected with SIV/SK-R345V and SIV/SK-R345A (Fig. 2a
, lanes 3 and 4) and expression levels were similar to those in WT virus-infected cells (lane 2). To examine the status of HA present in virus particles, purified virons grown in the presence or absence of corresponding protease were separated by using SDS-PAGE followed by staining with Coomassie blue. HA remained in the form of HA0 in SIV/SK-R345V and SIV/SK-R345A when virus particles were grown without adding elastase (Fig. 2b
, lanes 4 and 6). In contrast, the majority of HA0 was cleaved into HA1 and HA2 in SIV/SK-R345V and SIV/SK-R345A virus particles when grown in the presence of neutrophil elastase, although traces of HA0 were visible (Fig. 2b
, lanes 3 and 5). As a positive control, HA1 was found in purified WT SIV/SK grown in the presence of trypsin (Fig. 2b
, lane 2).
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| DISCUSSION |
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Stech et al. (2005)
described an approach to generate a live attenuated virus. Accordingly, a mutant of strain A/WSN/33 with a modified cleavage site within HA was generated which was dependent on proteolytic activation by elastase (Stech et al., 2005
). This mutant was strictly dependent on elastase and grew as well as WT in tissue culture, but was entirely attenuated in mice at a virus dose of 106 p.f.u. At a dose of 105 p.f.u., it induced complete protection against lethal infection. These promising results prompted us to investigate whether the strategy was applicable for SIV in its natural host.
Here, we generated two elastase-dependent mutant SIVs. Initially, we constructed plasmid pHW-SIV/HA-R345V, which encodes HA with a modified cleavage site that is susceptible to human neutrophil elastase. We were concerned that upon infection with the virus, neutrophil infiltration could trigger and support virus replication in vivo by releasing elastase, so we designed plasmid pHW-SIV/HA-R345A, which encodes HA with a porcine pancreatic elastase cleavage site at the junction of HA1 and HA2. Both mutant viruses could only be rescued in the presence of human neutrophil elastase. Although SIV/SK-R345A could grow in the presence of pancreatic elastase, it underwent the adaptation when passaged five times with pancreatic elastase. Sequencing results showed that an optimal cleavage motif of Pro344–Ala–Gly instead of Ser344–Ala–Gly was generated under the selection pressure, suggesting that when modifying the HA cleavage site, the adjacent amino acid sequence of the HA cleavage site should also be considered in order to achieve the most favourable protease recognition and cleavage.
The two mutant viruses were further characterized in vitro. Both mutant viruses were solely dependent on neutrophil elastase activation and, in the presence of the appropriate protease, they resulted in analogous titres to the WT virus (Fig. 1a–c
), suggesting that their growth ability was preserved in tissue culture. Furthermore, tissue-culture-grown mutant viruses were able to infect cells and synthesize a similar amount of viral proteins to the WT virus (Fig. 2
). Most importantly, the mutant viruses were genetically stable (Fig. 1d
). These features make the two mutant viruses good candidates for live vaccines.
The next step towards development of a live vaccine would be to examine whether the mutant SIVs were attenuated and could not cause significant illness in pigs. Biologically, it might be possible that one or both mutants could cause unusual infection and disease, if the host could provide enzymes with appropriate substrate specificities. Data from our clinical observation showed that only pigs infected with the SIV/SK-WT showed signs of respiratory distress and elevated temperatures typical of SIV infections. SIV/SK-R345A at high dose (4x106 p.f.u.) caused a slightly raised body temperature (Fig. 3
). Our records for each individually infected animal in this group showed that the temperature of two of five animals increased by 1 °C on day 1 p.i. The body temperature of the remaining three animals did not show significant changes (increased by 0.2–0.5 °C). The single increase in body temperature could be due to stress factors or individual immune variation.
Results obtained at necropsy and histopathology revealed that SIV/SK-R345V and SIV/SK-R345A viruses were not able to induce macroscopic or microscopic lesions in lung tissue. In addition, failure to isolate SIV/SK-R345V and SIV/SK-R345A viruses, but not WT SIV/SK, from lungs and nasal swabs contributed to the conclusion that these viruses were attenuated in pigs. Lack of elastase in the lungs and inability to cleave HA most likely enables only limited replication cycles for SIV/SK-R345V and SIV/SK-R345A viruses, thus preventing SIV disease. In our study, we tested two doses of mutant viruses in pigs. Our data showed that even at a high dose (4x106 p.f.u.), neither virus caused any disease in pigs, removing the concerns that neutrophil infiltration to the site of infection may provide elastase to support mutant virus propagation.
Taken together, our results confirmed and extended the approach proposed by Stech et al. (2005)
by applying the idea to SIV and testing it in its natural host. The mutant viruses maintained their growth ability in the presence of appropriate protease in tissue culture, but were highly attenuated in pigs. Currently we are testing the protective immune response of SIV/SK-R345V and SIV/SK-R345A in pigs.
| ACKNOWLEDGEMENTS |
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Received 7 July 2008;
accepted 28 September 2008.
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